P05-17, P05-17 (genetic_marker) Gossypium hirsutum

Marker Overview
NameP05-17
Genbank IDCA994321
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994321
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:52426294..52427702 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:93931773..93933174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:50189631..50191039 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:91781292..91782693 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:14769823..14771231 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:23713493..23714894 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:15277098..15278505 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:117580103..117581508 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4467.1supercontigscaffold4467.1:55364..56772 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:11292627..11294028 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:49916070..49917478 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:83533093..83534494 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:52417258..52418666 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:52567040..52568448 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:98542656..98544057 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:51124694..51126102 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:97518209..97519610 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:49423707..49425115 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:92615031..92616432 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:87534026..87535427 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4231supercontigscaffold4231:376400..377808 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2341supercontigscaffold2341:185975..187376 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:50182975..50184383 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:91931055..91932456 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:51233638..51235046 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:93691907..93693308 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:50083976..50085384 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:93299381..93300782 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:52289097..52290505 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:100847251..100848652 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:51392782..51394190 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:95044835..95046236 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:52472109..52473517 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:100515319..100516720 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:106946552..106947953 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:101188130..101189531 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:47567209..47568617 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_11chromosomeChr_11:32613060..32614468 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:50396110..50397517 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:34911424..34912831 -Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:76681109..76682510 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:26970273..26971679 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeP05-17:1..984 .
Chr11:47999641..48001049 -		n/a
Chr11chromosomeP05-17:1..984 .
Chr11:33548704..33550112 -		n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A183.2P05_17View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A71p05-17View
3TM-1 x WT-936, F2 (2005)AD_ch14_Dt.02N/A33p05-17View
4AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A261p05-17View
Sequence
>P05-17 ID=P05-17; Name=P05-17; organism=Gossypium hirsutum; type=genetic_marker; length=984bp
GGGATAATCAAACAAAAAGAACTAAATACATCGAGACCAATTATTAGCTA
ATTCAGTATCAACTTACACACAACGTGATTCATGCACAATTAGGCATACA
CCTATTTATACATATAGGGTTACCTAACAAGGTTTTTACCAGATGTTAAC
CTAATTCCAGAGCAAGATACATTTGGAACAAACTAGATACATACAACATA
TTTGCTCCGGGTTTACGGGAACATATTTAAAAGGAAGATAGATCTTATGG
TTCTAAAGGTCTAATATACTTACATATGAAACTACCATGGTGGTATACTA
CTTTTCTCCGATCCTCTACTTTCTATGGGCTTTGAGCATCATATCCGAAA
GAGGGCCGATAAGGGTTTCATATTCCAACGGTGCTAAATCATGAGCCAAC
TTCATTCTCCGGGATTCTTGCTGTGCTTTCTTTGAACGGAACATAGATTG
AACTCGTATAACAGCTTTCTCAACACGTTCTTCAGCTTGTTTTCGGCTGC
TTATGTAGTAGGCCTCTTCTACGTAAGTTTCCTGCCTTTGCTCTTCAACT
GCTTCGTCTGTGGTTATTTGTAGTCCACGAAAACCTTTTCTCCTTAATCG
CCATCGCAAAATTGCTTTTTCAAGCACACCAACTGACCATACAATCTTAC
GGTACTGCCTCCTTGCTTGGAAGCCCCGGAAAGCGGCTTGGATTTTGATA
GCCTGGCGGCGCATATTTAGGAAATCTTTACGCATTTTCCAAGTGCGGAA
CCTATATTGGATGTGGGCAGCAGCAGCCATTTTCCTTTTAGCCTCGTAGT
TGCGAAAGGCATGTTGAATCTTCATAGCTGCAATTATACTTCTTGCTTCC
TCCTCTGCATTGTAAGACTCAACTGCTTTAGCTCGAACTTTGAAGGAGTG
TGCCCTGAATGCAGTGTTTATGCGCGCAGCCGCATCAGCGGCTGTCCTAT
AAGCAGCTAAAGTTTCCCTCAAATACAGTTCATC