P12-16, P12-16 (genetic_marker) Gossypium hirsutum

Marker Overview
NameP12-16
Genbank IDCK640497
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640497
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:56520536..56521165 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:54470487..54471116 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49859014..49859643 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:1306880..1307510 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:2654998..2655628 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold104.1supercontigscaffold104.1:1469515..1470144 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:53636204..53636833 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57597346..57597975 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:56846420..56847049 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57220439..57221068 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:53552177..53552806 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12601supercontigscaffold12601:257268..257897 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:54860500..54861129 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55442730..55443359 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:55395194..55395823 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:56377972..56378601 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:55476671..55477300 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57817036..57817665 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:1612089..1612718 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:81730865..81731495 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:54329768..54330396 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:44068451..44069081 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:38978120..38978750 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:54171561..54172191 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:41093511..41094128 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:31963142..31963772 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39669934..39670563 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:80846906..80847536 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:155913430..155914060 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeP12-16:16..644 .
Chr01:53924714..53925343 +		n/a
Chr1chromosomeP12-16:16..644 .
Chr1:3577290..3577919 -		n/a
Chr1chromosomeP12-16:16..644 .
Chr1:3567763..3568392 -		n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.07N/A39.7P12-16View
2AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A176P12-16View
3Palmeri x K-101, F2 (2007)AD_ch16_Dt.07N/A7.6P12_16View
Sequence
>P12-16 ID=P12-16; Name=P12-16; organism=Gossypium hirsutum; type=genetic_marker; length=647bp
GATCGGGGATCGTCACCTGCGAATGTCGAAGTATTAGCACCAATGGTAAA
ACACAGAAGACTTGAGCAGATTCTGCGCTCTCAAGAACCAGGATCCAAGA
TTATAGTCTTTTGTTCAACCAAGAAGATGTGTGATCAACTTGCTCGCAAC
CTCAGTCAGTTTGGAGCTGCTTCTATCCATGGTGACAAATCTCAGGCTGA
CAGGGACTACGTGCTTGGTCAGTTTCGCTCTGGGAGGTCGCCAGTGCTTG
TTGCTACTGATGTTGCTGCTCGGGGCCTAGACATTAAGGACATCAGGTAG
GGGTTGGGATTTCTGACGCATGGTTCCATGGCGTTTACTTTATAGCTCAA
AGGAGCCACAAATGATAAATACAGGAAACCCTTGGTCTTTAAAGTTTAGT
AACTTTATTGCTTCTGCTGTGTCGAGTGTATCATGATAATGATTTGCATT
TTTTAATATCTTTCACAGGGTGGTAATCAACTATGACTTCCCTACTGGAG
TTGAGGATTATGTTCATAGGATTGGAAGGACTGGAAGGGCAGGTGCAACT
GGATTGGCTTTTACATTCTTTGGTGATCAGGATTCGAAGCATGCTTCAGA
TCTCATCAAAGTTTTAGAAGGAGCAAACCAGCAGGTGCCTGCAGCCA