A1807, A1807 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1807
Genbank IDCK640456
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640456
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:2626978..2627694 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:2935601..2936317 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:2565467..2566183 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:2668852..2669568 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:54893092..54893800 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:12364828..12365544 +Gossypioides kirkii genome ISU_v3n/a
tig00000498_CRI-A2_v1.0.a1chromosometig00000498_CRI-A2_v1.0.a1:305852..306568 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:2142076..2142792 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:123124269..123124985 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:78478417..78479133 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:46985674..46986390 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:2441653..2442369 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:2768491..2769207 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:2616924..2617640 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:2819858..2820574 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:2589481..2590197 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:2756050..2756766 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:2625887..2626603 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:2852704..2853420 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:2620176..2620892 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:2825202..2825918 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:2820334..2821050 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18571supercontigscaffold18571:41986..42702 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12122supercontigscaffold12122:84604..85320 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:2540388..2541104 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:2667003..2667719 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:2504090..2504806 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:2684423..2685139 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:2483008..2483724 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:2645158..2645874 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:2446758..2447474 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:2867375..2868091 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:2536773..2537489 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:2519494..2520210 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:2716772..2717488 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:2854911..2855627 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:2793916..2794632 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:2828523..2829239 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:2517875..2518583 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:2954751..2955462 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:2398918..2399634 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:2401739..2402454 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:2352500..2353216 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:2423154..2423870 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:2267400..2268114 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:1711868..1712584 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:2344042..2344758 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:2826057..2826773 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:2214863..2215579 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:2786991..2787706 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeA1807:1..717 .
Chr08:2502517..2503225 +		n/a
Chr8chromosomeA1807:1..717 .
Chr8:66406625..66407333 +		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pima S-7 x n2, F2 (2007)AD_ch12_At.12N/A163.4A1807View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A212A1807View
3TM-1 x WT-936, F2 (2005)AD_ch12_At.12N/A87.6A1807View
4Palmeri x K-101, F2 (2007)AD_ch12_At.12N/A197.7A1807View
5Pima S-7 x im, F2 (2007)AD_ch12_At.12N/A224.8A1807View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A53.1A1807bView
7PD 94042 x (AD)4-08, F2 (2016)AD_ch26_Dt.12N/A15.6A1807aView
Sequence
>A1807 ID=A1807; Name=A1807; organism=Gossypium herbaceum; type=genetic_marker; length=717bp
CTTTGCAAAGGTCTGGCATGCTTTCAATTGTGATTGTGTGTCCAGGAAAA
AGCCCAAACAAGTGTGAAAGATGTCGGTGATGCACATCAGGGTCCTGAAA
ATCTTGTGCCTGTCTATCAAACAGGTAAGTTCTTAACCGGAAAATATCAA
CAGTTTTGATACACTGACTTATGACTGAAAATCAAGGTCTTGAAAAGTTA
GCTTTAACTTTGTGGAGTTACTGACATACCCATTCCATGATGGAACCATC
TTTCGCAACTTTGGTTGGGTAAAGCCTCGATTGAGCGTTATGCACTCTTT
TTACTAAATCATCCTCATTTTTATCCAAAACCTGTACCAACATAAAGAGT
TTAGTGAAATGGAGAACTAGGATTCTTCTTGTTAAGTTTAGAATAAGGGA
TTCACCTCAGCAGCTGAAACAATCACAGAGAAGACTTCTTTTATGATTGC
CATGTCCATGGTTGATGAATAGCTCACACTAGCACGGTTACCATCTGGAG
CGATAAAGTCATGTTCAGGAGATGTTGATGGGTTAGTTTCAAGATAACCT
CCTTTCCCTTCGATCAACCAATCTAACAGAAATAGCCCGCACCCTTTCAA
CAAAGGGTATGCCTTGTCTTTAAGAAAATCCTAAAAACATAGGACATATT
TAATAGTTAAAAGTCATTTCATAATGTATTGTGTGTTAAGAAAATGATAG
TATCAGCATTACAATGC