A1155, A1155 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1155
Genbank IDCA994011
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994011
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:98340454..98341649 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:107530734..107531929 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:93608467..93609662 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr2chromosomeDt_chr2:49064337..49065532 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:94458250..94459445 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:112012385..112013580 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:112595287..112596482 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:110301476..110302671 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:107088685..107089880 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:77305863..77307058 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23974supercontigscaffold23974:9361..10556 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:110008855..110010050 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:109964914..109966109 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:108600549..108601744 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:106093391..106094586 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:113909201..113910396 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:117221763..117222958 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:5744636..5745831 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:32975468..32976649 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch01_At.01N/A57.9A1155View
2AD-genome wide Reference Map (2009)AD_ch01_At.01N/A30A1155View
3SMA-4 x A1-97, F2 (2005)A_SA_lg05N/A3.8A1155View
Sequence
>A1155 ID=A1155; Name=A1155; organism=Gossypium herbaceum; type=genetic_marker; length=1208bp
CTTGCATTGCCTGCAGCTTTCTAAGTTAAACATTGTTTGTAAAATAATTA
ACACTTGAGAATCTGAAATTATTCATTAAAAGACTGTTGGTAGTTTTGCT
TCAGTATCATAATATGGAGATATTTAGGTCTCCATATGATTTGTGTCAGT
CTGTATAACAAATTTTTCTGTTGCTTTGGCATTATTACCATGTCTGATGT
AGCAAAATCTGATGAGACCTTCATCGTTTTTACAGGGATCAAGGGCTTGC
ACGAAGAAGGCTAATCAAAACCACATAAATTTATTGAAAATGCAGGAAAA
GGAACTTTCAGTATGTATTTCGTTTTCTTCACCTATCCTGTATTAGTTGC
AAAAACATTATGGAAAACTATGTTACCTGCTGGCTGAGTCTAATACATGC
ATGTGTCAAATACGGGTATGCTCAACTTTTTAAAATATCGTTTTTTTGGA
GGATCATATCCATATTTATGTCCAAACATGTCTTGTGGACACAATTTTTG
GTTATGGGTTCGCTAGGAAAAATGGAAAGTCCGTCTATGTTTTATTCTAC
CACTTGGATATTCCAGACAGCAAAAAGTGCAAGGATTCCTTCTCATTTTA
GACTATTCTAACATATGAGGTGTCTAATAGTGATGGAGTAATCCAAAATT
CCAAATATATTGAATCATTTCTCTGTTTTAGCTGAAAGATCAGGTCTGGA
ATCTTTAACCAACCTGATAACAAGAAATGCTCATATTGTTGTTAATCATA
TATTTTTTTAAAATTTTATTGTCAGGACCTCAAGGATTTGTTGTTAACAG
CAAAAAGAGAGTTTGAAGACTTACAATCACAACTGCAAATAGATTTGAAA
AATATAGGTATATTACGTTAGCAATCATCTTGTAGCTAAATTGAGTAACC
CTTGTTGAGATTATTTGCTCCATTTCCTACATGCTTTGTCATTTAGATTT
TTCTTCCTAAACTTTTTAACTTCAAATGCATGTGTTTTAGTTTTTTCTTA
GATTTTATGGCTTCTCCATAGTCATCTTTTTCTCATGATGAATTCAGCTA
AACTGTATAAATGCAAAAAATAGTTGTATCATAAATTGTACTTCCTAATT
TTACTCATGGAGCTTACCGGGGTAAATGCATGAATTCTTCTTCTGAGAAT
TTTTTCCCCATCATTACTTACACGGTCTCAGGAAGTCAAGTAGAAGAGAT
GTCCACTG