M16-045, M16-045 (genetic_marker) Gossypium hirsutum

Marker Overview
NameM16-045
Genbank IDCA994292
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTM-1
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994292
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:14688780..14688906 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:15656512..15656638 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:13754736..13754862 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:15317560..15317686 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:12983559..12983685 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:11705007..11705131 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15414902..15415028 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:47382271..47382397 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:22660980..22661106 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:55090426..55090552 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:3355730..3355856 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:13768543..13768669 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:13925215..13925341 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:14313076..14313202 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:15631057..15631183 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:13934356..13934482 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:15124114..15124240 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:14135960..14136086 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:15646295..15646420 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:14027436..14027562 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:15808103..15808229 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold13281supercontigscaffold13281:54012..54138 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8803supercontigscaffold8803:51359..51485 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8803supercontigscaffold8803:44369..44495 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8803supercontigscaffold8803:31932..32058 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:14188557..14188683 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:14913523..14913649 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:14164199..14164325 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:15537820..15537946 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:14057940..14058066 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:15346522..15346648 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:14492254..14492380 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:15586090..15586216 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:14202187..14202313 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:15149818..15149944 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:14505624..14505750 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:15905336..15905462 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:15256942..15257068 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:13040866..13040992 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:70963976..70964102 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:13581281..13581407 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:12191813..12191939 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:11657499..11657625 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:14003039..14003165 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:11796344..11796470 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:10134052..10134178 -Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:16803193..16803319 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:13281091..13281217 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:179125041..179125167 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeM16-045:1..127 .
Chr09:12937867..12937993 -		n/a
Chr9chromosomeM16-045:1..127 .
Chr9:20473361..20473487 -		n/a
Germplasm
Stock NameType
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch05_At.05N/A17.8M16_045aView
2Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A29.8M16_045bView
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A32m16-045View
4AD-genome wide Reference Map (2009)AD_ch05_At.05N/A44m16-045View
Sequence
>M16-045 ID=M16-045; Name=M16-045; organism=Gossypium hirsutum; type=genetic_marker; length=127bp
AGATTAGAACACGATTGTCAATAAAAACTAAACAAAGCAGGAACAAAGAG
TAGCAAAACATAAAATCCCATATGCAGTCATAAAATTCATTCATCAACTA
AACGGACCAAGCTCTGTTTTACTTCTA