A1690, A1690 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1690
Genbank IDCK640441
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640441
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:8048470..8049244 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:7866606..7867381 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:7922796..7923572 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:55915853..55916627 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:7406665..7407439 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:7852063..7852837 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:8059712..8060486 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:8441448..8442222 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:5926571..5927346 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8611supercontigscaffold8611:22433..23208 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:7566679..7567454 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:8133452..8134227 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:7986733..7987508 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:8114343..8115117 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:7861299..7862074 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:8235622..8236396 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:8560986..8561764 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:7801251..7802027 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A45.77A1690View
2Palmeri x K-101, F2 (2007)AD_ch05_At.05N/A43.7A1690View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A55A1690View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A54A1690View
Sequence
>A1690 ID=A1690; Name=A1690; organism=Gossypium herbaceum; type=genetic_marker; length=763bp
AGACAGTTGATCAGTCACCTGCGGTTGAGATCAGTGAAACGTGTATGGTG
ATGGAACCAGTATCAAAGATTAGGAGAGCAAGTAGCTGTTCAAGTTTGGA
GCAACGCGCCACGTTGCCGCGAACATTGAGTTTTTGATACCTACAGCTAC
AAGTACCAATGTGACTGACACGCAGTAGATGTTAATAAACATAATTTTTT
TTTTTTAAATTATTCCCTTGCACAAGTTTTAAGGAAAATCATGGGACAAA
AATAAATCAACGAAAATCGAGAGGCTTCGAGATTGTTATATTTATTGTTG
TTGTTAATAATTTGTTATTAAGTGGAGAGGGCGATTTTGCGTCAAGTTTA
GAGAATCTTGTGCAAACTAATTTTTCTTGATTAACTTTTGTTACTTTTCA
AACTTACTATATCAAAATGAAATAACGAGCTTCTTGAAATTTCAAGATTG
AAACAGAACGAGCCTATCAATTGATATAAATGATATTCATATGTAGTATA
CTTTTACGTTGAAAGCTGAAACCAATGACTCCTAAAAGGGCTTGGTGCAA
CACGTCGAAATCTAACCCCTCAAAAATCAGAGCAAACTTTGATTGTTACT
TTTGGACTTAGTCTAATAAGTAACCCATCCTGTTCCATATCCAATATAAA
TCCAATCGTATGAATCGAAACGTGAAAATTATGACATAGTAGAAAAATTA
GCGATTATCAAACAACGGCTATTATCATAACAAGTCATAGAAATGAAAAA
TATTTCTTGTCTA