PXP0027, PXP0027 (genetic_marker) Gossypium barbadense

Marker Overview
NamePXP0027
Genbank IDAF060582
TypeRFLP
SpeciesGossypium barbadense
GermplasmPima S-6
Source TypeGenomic
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF060582
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:25980956..25981376 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_10chromosomeD5_10:23858149..23858573 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:29964668..29965081 +Gossypioides kirkii genome ISU_v3n/a
KI_09chromosomeKI_09:24755131..24755545 -Gossypioides kirkii genome ISU_v3n/a
tig00021731_CRI-A2_v1.0.a1chromosometig00021731_CRI-A2_v1.0.a1:90289..90710 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00009069_CRI-A2_v1.0.a1chromosometig00009069_CRI-A2_v1.0.a1:46209..46630 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008893_CRI-A2_v1.0.a1chromosometig00008893_CRI-A2_v1.0.a1:9432..9853 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008840_CRI-A2_v1.0.a1chromosometig00008840_CRI-A2_v1.0.a1:15959..16380 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008117_CRI-A2_v1.0.a1chromosometig00008117_CRI-A2_v1.0.a1:62561..62982 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:81079423..81079844 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:40665689..40666110 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008921_CRI-A2_v1.0.a1chromosometig00008921_CRI-A2_v1.0.a1:30753..31174 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008800_CRI-A2_v1.0.a1chromosometig00008800_CRI-A2_v1.0.a1:72212..72633 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008752_CRI-A2_v1.0.a1chromosometig00008752_CRI-A2_v1.0.a1:26080..26501 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008702_CRI-A2_v1.0.a1chromosometig00008702_CRI-A2_v1.0.a1:30134..30555 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008699_CRI-A2_v1.0.a1chromosometig00008699_CRI-A2_v1.0.a1:45653..46074 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008680_CRI-A2_v1.0.a1chromosometig00008680_CRI-A2_v1.0.a1:8931..9352 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008561_CRI-A2_v1.0.a1chromosometig00008561_CRI-A2_v1.0.a1:54595..55016 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008132_CRI-A2_v1.0.a1chromosometig00008132_CRI-A2_v1.0.a1:11269..11690 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00008092_CRI-A2_v1.0.a1chromosometig00008092_CRI-A2_v1.0.a1:74675..75096 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00004800_CRI-A2_v1.0.a1chromosometig00004800_CRI-A2_v1.0.a1:20370..20791 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:62218732..62219153 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016614.1chromosomeCM016614.1:124271581..124272001 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:56659663..56660083 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold20850supercontigscaffold20850:1181..1601 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:24867522..24867942 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:25962641..25963061 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:24831000..24831419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:25443982..25444401 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:25616168..25616588 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
Chr06chromosomeChr06:41639890..41640311 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E02chromosomeE02:12659461..12659881 +Gossypium stocksii (E1) genome NSF_v1n/a
scaffold300supercontigPXP0027:1..420 .
scaffold300:66226..66646 -		n/a
Germplasm
Stock NameType
Pima S-6accession
Sequence
>PXP0027 ID=PXP0027; Name=PXP0027; organism=Gossypium barbadense; type=genetic_marker; length=430bp
ACTTTATTGCTTAGTTTGGCTTTTATGGAAGCTTTAACAATTTATGGGCT
GGTTGTAGCATTGGCACTCTTATTTGCGAATCCCTTTGTTTAATCCTATA
AACATGAGAATTTTGTATTTTTTTTTCTTATTTTATGGCTTGGGACTTAC
TCCTCGCTTTTTCGAATTCTATCAAGATTTCACCCCTACAATTAATTATT
CGTTGGGACAATAATCCATGGGAAGGATTAATTTGAGGATGAGGAATTAT
CACACCGACTCGCTTTCTTCCTTCCCCTTCTTAGCTCAAGAGAACCCCTT
ATTTCTCATTTATTGTTTAAAGGAGTATTGCAACGAATGAGGTATTTGGG
CATTGACATGAAACCTGCCCCCTAATTCTAATAAGATTATTATTATAATG
AATTTCAATNGAAAAAAAAATCATTCCTNG