pAR0177, pAR0177 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0177
Genbank IDCA992757
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992757
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:1229077..1230139 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:1246783..1247832 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_12chromosomeKI_12:38665402..38666420 -Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:1036091..1037154 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D12chromosomeD12:1226834..1227896 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:1228443..1229505 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:1213268..1214330 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:1236415..1237477 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:1267058..1268120 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:1342436..1343485 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold832supercontigscaffold832:239638..240687 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:1236822..1237871 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:1198878..1199927 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:1166699..1167761 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:1176722..1177784 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:1245207..1246256 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:1268107..1269169 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1234380..1235443 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:1176038..1177078 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:1112954..1114017 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:1082432..1083495 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:1126608..1127671 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:1079814..1081231 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:850842..851920 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:1120412..1121469 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:1314828..1315909 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeChr12:1168008..1169074 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomepAR0177:1..469 .
Chr08:1216230..1217293 -		n/a
Chr8chromosomepAR0177:1..469 .
Chr8:65071540..65072603 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.12N/A102.2pAR0177View
2TM-1 x WT-936, F2 (2005)AD_ch12_At.12N/A105.6pAR0177View
3AD-genome wide Reference Map (2009)AD_ch12_At.12N/A221pAR0177View
4AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A7pAR0177View
5Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch26_Dt.12N/A179pAR177bView
6Palmeri x K-101, F2 (2007)AD_ch26_Dt.12N/A157.4pAR177bView
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch26_Dt.12N/A128.27pAR177View
8Palmeri x K-101, F2 (2007)AD_ch12_At.12N/A213.6pAR177aView
Sequence
>pAR0177 ID=pAR0177; Name=pAR0177; organism=Gossypium hirsutum; type=genetic_marker; length=475bp
ACCATCAAAATTTGCCATTAATGCATCCATAAAAGCATATCATCTCCAGA
AGCAAATACATAGTAAACAAATTTTGATGAAAAATATTAACAATATAAAT
TATTTAACTTGAAATTTTAAATCCAAAAGGTAAGAAATTTTAATTAACCT
ATGCTTAAATACAGAAACTGACAGCATATTTGGAACCTTCATGGAAAGAA
AAGGTGAACATGTTTAAACCTCATTCCTCAATCACACGCTTTGCACCATC
TAAGGTATTCCGGAGCAGCATTGCGACTGTCATCGGGCCAACGCCACCAG
GAACAGGTGTTATCCATCCAGCAACCCTACATGCTGCTTCAAAATCCACG
TCTCCCACTAACCTGTATCCTGATCGCTTAGTTGGGTCATCGACGGCATT
GGTTCCAACATCAATAACCGCAGCACCAGGTTTGATCCAACTGCCTTTGA
TCATCATAGCTTGTCCTGCCTCGTG