pAR0988, pAR0988 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0988
Genbank IDCA993630
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993630
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:14612707..14613900 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:13663277..13664469 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:12921998..12923183 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:47453641..47454828 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:55165242..55166435 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:13692452..13693645 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:14237059..14238252 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:13859477..13860670 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:14059890..14061083 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:13951362..13952555 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:14106426..14107618 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:14081630..14082822 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:13976540..13977733 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:14413604..14414796 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:14115326..14116518 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:14429550..14430743 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:12979327..12980513 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:13507230..13508416 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:12119135..12120319 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:11589749..11590937 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:13916275..13917463 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomepAR0988:1..577 .
Chr09:12876219..12877405 +		n/a
Chr9chromosomepAR0988:1..577 .
Chr9:20411570..20412756 +		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A92.5pAR988bView
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A75.34pAR988View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A164pAR0988View
4Palmeri x K-101, F2 (2007)AD_ch06_At.06N/A126.7pAR0988View
5AD-genome wide Reference Map (2009)AD_ch06_At.06N/A240pAR0988View
Sequence
>pAR0988 ID=pAR0988; Name=pAR0988; organism=Gossypium hirsutum; type=genetic_marker; length=587bp
ACACATACCCCATTAATCTCTTTATTTATTTATGTAATATATCCGCCGCT
CACGGGGGCAGCTTGAATGACAAAGCATCAATAGCCACCGTGGGCTAGCG
CACCCTTGGCCAACATTACTTACAAAAAAACAAGGGCAAACTAAAGCTTT
AGCTGTCAGCTCTTAAAACACCTTCTACGGTTACTCGAGACATCAAATAG
CATCAAGAGACAAAGACAGAGACAAAATAGCACATTGAAAAAAAAGAAAA
GAAAAGAGAACACACTATTTACATGCAACCCTGGCTCACTAGAGCAGCCT
GCTAGCCGCCTGTCAGTCGCCACCCTCTCAGCGATGCTTGCTCCTGGTCT
CCCCACTGTAAAGCCAGTCATAGACGGTAGGAGAGTTAGGTTGTGGCTTG
TCGAAAACTTCAGAACCTATACTTTTGGTGGCGAGGTTGCTACCCGGATG
GAACACACTCCTCCACACGTTCTCCTTACGCGCCGTCGGAGTCGTCGGTG
TCACGGGTGTCGGACCTGACACTGGACTATTCGGGAGGGACAACGACCTC
TGGGACTTTTTCCTTTCTCCTTCATCTTTGCTCGGGC