PGML0222, PGML0222 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0222
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)9
Primer 1PGML0222_F: TGAGTTCGAGTGCGTTAAAGT
Primer 2PGML0222_R: AACCAATGAAATCAATCTCCAAA
Product Length202
Publication[view all]
CommentBAC_ID=FITB5307.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:3960525..3960721 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_13chromosomeD5_13:3322759..3322960 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:3426172..3426367 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:48885598..48885794 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold47332supercontigscaffold47332:527..723 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:3746988..3747184 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:3784426..3784622 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:3834510..3834706 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017635.1chromosomeCM017635.1:3585736..3585932 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:3848374..3848568 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D13chromosomeD13:3864086..3864282 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:3343401..3343600 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:3623717..3623912 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:3801344..3801535 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:3756780..3756976 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:3844082..3844277 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch22_Dt.04N/A0PGML00222View
Sequence
>PGML0222 ID=PGML0222; Name=PGML0222; organism=Gossypium raimondii; type=genetic_marker; length=202bp
TGAGTTCGAGTGCGTTAAAGTACATTATCTTCTTATCTATAGGTTAAAGA
GAAATAATAAGTAATTCTAAGTACTATATAAAAAATAACAGATATAATCA
GGTATAGTTATATATATATATATATAACCCTTGAGTTAGGTCAAAAGATA
AAGTAATGTTAAATTTTTATGATTAAGAATTTGGAGATTGATTTCATTGG
TT