PGML0212, PGML0212 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0212
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTT)4
Primer 1PGML0212_F: GTCGTTGCAAGGGACTACAA
Primer 2PGML0212_R: TGCCTTGCTTCTCTACGGTT
Product Length222
Publication[view all]
CommentBAC_ID=FITB3400.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:10070200..10070429 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:18203437..18203658 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:22035660..22035888 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:12894069..12894291 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:12058935..12059156 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016614.1chromosomeCM016614.1:94446418..94446659 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:7246192..7246413 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:14377028..14377249 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:9820821..9821050 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:22524124..22524345 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:9511838..9512067 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:23460093..23460314 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:9805641..9805870 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:23644766..23644987 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:22454710..22454931 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:12913817..12914039 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:21221165..21221393 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:22806405..22806633 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D06chromosomeD06:9108644..9108873 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:23241649..23241871 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:12866765..12866986 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:21347619..21347847 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:23186111..23186339 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:13196288..13196510 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:23069174..23069402 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:13029368..13029590 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:9329387..9329616 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:13211009..13211230 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:12711011..12711232 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:8957216..8957445 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:12790332..12790554 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:9589506..9589736 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:13304356..13304578 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:8918110..8918333 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:5745198..5745417 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:9641402..9641625 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0212 ID=PGML0212; Name=PGML0212; organism=Gossypium raimondii; type=genetic_marker; length=222bp
GTCGTTGCAAGGGACTACAATATTAGGAACACTTGATTTTTATTAATTTA
GCCATTTATTTTTGTTGCATTTTTTAGTTTAATTTTTACATTCTTATTTA
TTTTATTTTATTTTCTTCTGGCAAGTTCCTTTAGTTTATGACAAAAGAAA
CCTATCCGGACCATTTTTATTTGATAGTGAAATTGAAAATACTGCTCGCA
GAAACCGTAGAGAAGCAAGGCA