PGML0200, PGML0200 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0200
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAAT)3
Primer 1PGML0200_F: ATTTCGCCTGTATGCCTTTG
Primer 2PGML0200_R: GTGGCCCATGATCACCTCTA
Product Length345
Publication[view all]
CommentBAC_ID=FITB3182.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:3515219..3515546 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:3443411..3443738 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:54059615..54059959 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr1chromosomeDt_chr1:38440545..38440872 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:3328506..3328833 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:3503262..3503589 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:3457971..3458298 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:3521874..3522201 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:3493347..3493674 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:3413620..3413947 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:3356054..3356381 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:3414360..3414687 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:3334942..3335275 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:3406213..3406540 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:3640857..3641184 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:3350900..3351244 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:3316532..3316840 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:3304047..3304353 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0200 ID=PGML0200; Name=PGML0200; organism=Gossypium raimondii; type=genetic_marker; length=345bp
ATTTCGCCTGTATGCCTTTGGTTTTTGCTTATAAGTGTGGTTAGCAAACA
TTTTAAGGGTGTATAATATACATATAAATCTGAGGTAAGTGGGTGATTAC
TGAACTTCAACATATGATAGCTCAGACTCTTCTGGTATTAGAAATGGATG
CTTCTATCTTCACTTTGCTGAAATCTTTGTAGTTGAAAAATAAAAATAAA
AATAGAAGTGAATATGCTCATCGAATATGCTCATCAAACTGGTTAAAGAA
TATAAACAAAAACGGATGCTTCTGGTACATCCTTTATAAAGTTGGTGTAG
GCACGATGTAACCTGACGTTTTAATTAGAGGTGATCATGGGCCAC