PGML0199, PGML0199 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0199
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTTTCTT)5
Primer 1PGML0199_F: ACGCAAATTAGGTCGTGGTG
Primer 2PGML0199_R: GCATCCAAGGAATGTTTGGT
Product Length226
Publication[view all]
CommentBAC_ID=FITB3429.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:4577849..4578062 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:6922880..6923099 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:4484422..4484635 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:53015393..53015617 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:4187557..4187770 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:22626759..22626972 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:47016218..47016437 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:4385318..4385531 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:6595307..6595526 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:4577281..4577494 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:6662014..6662233 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:4510222..4510435 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:6407148..6407367 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:4596669..4596882 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:6717952..6718171 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:4560253..4560466 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:6689779..6689998 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:4454638..4454851 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:6663358..6663577 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:4399561..4399774 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:4492724..4492937 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:4468500..4468713 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:6813175..6813388 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:4477096..4477303 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:4730851..4731064 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:6733372..6733591 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:4394767..4394992 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:4354658..4354876 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:4290448..4290984 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr08chromosomechr08:4290771..4291486 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:4325278..4325491 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:4337326..4337528 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4116434..4116646 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:3980300..3980513 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0199 ID=PGML0199; Name=PGML0199; organism=Gossypium raimondii; type=genetic_marker; length=226bp
ACGCAAATTAGGTCGTGGTGGGCATTTTCTTTCTCTTTCTCTTTCTCTTT
CTCTTTCTCTTCCTCCTCCTTGAATCACATTCGTTGTAAGAGTATTTCTC
CTTCCAAAGAAATTAAATCCTCTTTGCCTTTGAACTATATTGTTGGTTCT
TCTAATAGCTTCAACTAGTTTAGCAAAAGTCAGAAGAGGAAATGAACCCT
ATGCTCACCAAACATTCCTTGGATGC