PGML0196, PGML0196 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0196
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAAAAA)3
Primer 1PGML0196_F: AACGTGCTGAACCAAAGACC
Primer 2PGML0196_R: CCTGAAACTTTCCAGCTTCG
Product Length178
Publication[view all]
CommentBAC_ID=FITB3141.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:57144024..57144199 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:96823721..96823889 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:54585564..54585739 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:96769446..96769614 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:13979389..13979564 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:20445056..20445224 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:53538228..53538399 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:119689655..119689831 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold269.1supercontigscaffold269.1:1161369..1161544 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:47859409..47859577 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:52233998..52234173 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:76674293..76674461 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:57127093..57127268 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:105766243..105766411 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:56530066..56530241 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:104521843..104522011 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:57076120..57076295 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:101822382..101822550 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:54378905..54379080 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:98907605..98907773 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:54312380..54312555 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:94956764..94956932 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:57185074..57185252 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:98440662..98440830 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:56477605..56477780 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:102156051..102156219 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:57862703..57862886 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:108755272..108755440 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:54188246..54188424 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:97305656..97305824 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:56926099..56926274 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:106505040..106505208 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:110083136..110083304 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:108379258..108379426 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:12281087..12281264 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:82369973..82370136 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:54296650..54296821 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:38789446..38789613 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:36153863..36154078 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:54834685..54834862 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:32730791..32731053 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:28983700..28983867 +Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:93689659..93689829 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:82423098..82423256 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0196 ID=PGML0196; Name=PGML0196; organism=Gossypium raimondii; type=genetic_marker; length=178bp
AACGTGCTGAACCAAAGACCCTTGAAAATCGAAAACTCTGTCATCTGAAG
ACAACTGAAACAAAAACAAAAACAAAAAGAAACTAAATTAATTTTCTAGA
AACAAAATTGGAAGAAAAAAAAAAAAAGAAACCTGGTCGAACCCGAAATC
AAGATAGCCGAAGCTGGAAAGTTTCAGG