PGML0195, PGML0195 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0195
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAAA)3
Primer 1PGML0195_F: CCAAGACGGTGGGATGAC
Primer 2PGML0195_R: CGAATGCTTGTAGCTTCTGC
Product Length224
Publication[view all]
CommentBAC_ID=FITB3212.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:16834748..16834970 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_02chromosomeD5_02:29878399..29878621 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:48333554..48333777 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:48342115..48342608 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:49748309..49748529 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:46239961..46240183 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:29396493..29396715 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D02chromosomeD02:16507711..16507933 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:35322609..35322831 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:16292281..16292503 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:36914251..36914473 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:15776551..15776773 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:36261544..36261766 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:16191693..16191915 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:35687242..35687464 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D02chromosomeD02:16262682..16262904 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:16124084..16124304 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:15550249..15550466 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:16189013..16189240 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:16686286..16686512 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D03chromosomeD03:37335482..37335704 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:16625738..16625960 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:14602939..14603162 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:31963931..31964153 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:16420504..16420726 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:16411600..16411823 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:12622181..12622403 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:35257448..35257671 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0195 ID=PGML0195; Name=PGML0195; organism=Gossypium raimondii; type=genetic_marker; length=224bp
CCAAGACGGTGGGATGACGGGGTGATTCAAGTATCCCTCTTCCCTTTTTA
TATTTTATATGCGCTTGTGTACACGTATAGATAGAAATAATATAAAATAA
AATAAAAAATAAGAGAACAAAAATAGATCTCTAAAACCGAAATCCAAAAA
ATCACCTTAAGGCTTTGCGCTTTTATATTCTCTGAAAAATCCTTAAAAAA
GGAAGCAGAAGCTACAAGCATTCG