PGML0184, PGML0184 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0184
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CCATG)3
Primer 1PGML0184_F: AGGGATTTCTCAAGCCACTG
Primer 2PGML0184_R: CCTCGAGATTTGTTGGATCTG
Product Length400
Publication[view all]
CommentBAC_ID=FITB7791.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:40373949..40374348 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:38777173..38777572 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:15243003..15243402 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016617.1chromosomeCM016617.1:98535366..98535742 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:31027311..31027710 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:35687481..35687880 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:40477890..40478289 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:41619395..41619794 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:40664082..40664481 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:38302151..38302550 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:36854735..36855134 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:42041066..42041465 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:39277908..39278308 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:41899062..41899465 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:70496985..70497362 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:39079386..39079785 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:42144565..42144964 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:78521629..78522006 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:15203825..15204224 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:20527099..20527491 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:38788015..38788416 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:38291153..38291559 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:45775376..45775788 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:38776735..38777266 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:122499534..122499913 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0184 ID=PGML0184; Name=PGML0184; organism=Gossypium raimondii; type=genetic_marker; length=400bp
AGGGATTTCTCAAGCCACTGGGTTTTATTTATATATTTTTCTTCACAAAC
AGAGCGAGAGAGAGAGAGAGAGCGAAAAAGAAAAAGAGAGCTCAGTTTTC
AGGAAGAGAAAAAAAAAGATAGATACATGGTCATCTCAGATAGATAAATA
TATAAGGATAAATATATTTTCAAGGGTGTGGGGGCTCTTTCCAAGCCATG
CCATGCCATGTTGAAGAAAAGAGGAAATATATTTATATACAATATAATAT
GTGAAAAAAGAAAACTTTCACTACTAAATACTAATCAAAGCGAAGAAGAA
AATGTGTTGAGATGAAAGACAAAACAAAAAGCTAGAAAAAGTTTAAAGAC
AGACAGTTAAAAGGTTATTGACATCAAAACAGATCCAACAAATCTCGAGG