PGML0177, PGML0177 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0177
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATG)21
Primer 1PGML0177_F: CTGGAGATGCATTTCTGGTTT
Primer 2PGML0177_R: TTTGGGACCTCCATAACCC
Product Length375
Publication[view all]
CommentBAC_ID=FITB8022.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:308048..308408 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:255491..255851 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:249914..250288 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold1263.1supercontigscaffold1263.1:242182..242542 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:268541..268901 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:274268..274628 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:290332..290692 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:285345..285704 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:266296..266656 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:260144..260504 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:338103..338469 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:287875..288246 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D13chromosomeD13:314314..314674 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:245980..246354 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:771603..771971 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:292083..292444 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0177 ID=PGML0177; Name=PGML0177; organism=Gossypium raimondii; type=genetic_marker; length=375bp
CTGGAGATGCATTTCTGGTTTTGATTCTTTCTTACCCTTTTACCCTTGGG
TTTCTCTGATATCACTGATACAACATTTTGAGGAGACTCAGATGATGATG
ATGATGGTGATGATGATGATGATAATGATGGTGATGATGGTGATGATGGT
GATGAAGGTGAGGCTATGGAAGAATTAGAGGAAGAAGAACAAGTTGAAGA
CCTTTTCATTTTTTTTTTTTTGTTCTTTTCTATACAAAGTGAGTATAGGC
TTAGGAGATTGGCTTTAGCAACATAATGAGAAGAGGTTGTTTCTTTGGTG
ATATTCTACTTATTTATATATATATATATACACACATATTTATGATATAT
GATTTTGGGTTATGGAGGTCCCAAA