PGML0163, PGML0163 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0163
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAA)4
Primer 1PGML0163_F: CCTAAAGGAGTTCTTGTTGGGA
Primer 2PGML0163_R: TCGTCACAATTTCGCTATGC
Product Length165
Publication[view all]
CommentBAC_ID=FITB10312.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:2387951..2388119 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_12chromosomeD5_12:55089805..55089969 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:100442114..100442294 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D12chromosomeD12:2208394..2208562 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:2372502..2372670 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:2361481..2361649 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:2381166..2381334 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
CM017634.1chromosomeCM017634.1:2271173..2271341 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:2246868..2247035 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:2632170..2632346 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D12chromosomeD12:2474505..2474673 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:2495757..2495933 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:2508206..2508386 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:2321734..2321897 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:2191040..2191206 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:2231094..2231261 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:2106334..2106501 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:1560781..1560946 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:2134844..2135009 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:85847289..85847577 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0163 ID=PGML0163; Name=PGML0163; organism=Gossypium raimondii; type=genetic_marker; length=165bp
CCTAAAGGAGTTCTTGTTGGGAAATGTACTCATATTGTAGTAAATATGTA
ATTGTTTTCTATTTATTTGAACGATAAATAAATAAATAAAAGTTAACTTC
ACATTTCACTATGCCTTTTGTATTTCTATCTTTTATATTTTGTATGCATA
GCGAAATTGTGACGA