PGML0174, PGML0174 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0174
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAGCAC)3
Primer 1PGML0174_F: TGCTGAGTTAGCTCGGGATT
Primer 2PGML0174_R: TTTGACTGAGCCAATGCAAG
Product Length268
Publication[view all]
CommentBAC_ID=FITB7829.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:11046034..11046307 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:10065705..10065984 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:52355397..52355664 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:40534449..40534717 +Gossypioides kirkii genome ISU_v3n/a
Dt_chr11chromosomeDt_chr11:8110380..8110653 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:10010713..10010986 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:10361461..10361734 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:10274789..10275062 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:10541732..10542005 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:10736773..10737046 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:9868009..9868288 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:10460596..10460875 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:10199652..10199925 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:10419300..10419567 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:10349091..10349370 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:10647498..10647771 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:57173989..57174275 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:22768320..22768606 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:9786940..9787207 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:88259471..88259757 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:9924750..9925017 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:9220045..9220312 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:7614468..7614741 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:10093097..10093376 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:8383792..8384059 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:6676463..6676724 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:8569709..8569976 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:99538867..99539153 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeChr10:146549004..146549332 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0174 ID=PGML0174; Name=PGML0174; organism=Gossypium raimondii; type=genetic_marker; length=268bp
TGCTGAGTTAGCTCGGGATTTACTTGTTCTGAATGCTTTAGGCTTGATAG
GTGTNTGATATTTCGCCTAAGTGAACGAGATTTGGGATGTCCATGAACAA
CAATAATCCCCCCAAGAGCCTTGGAGCGTCTTCGTCTCCCTTCAGTAATG
CGGGGATGCCTGGAAACCCTGTATTCTCGCAAGCACAAGCACAAGCACAA
CTTAGTGCTGGTTTTCAAGCTCAGTTTCAGCTATCCCAAGCTCAGGCCCT
TGCATTGGCTCAGTCAAA