PGML0171, PGML0171 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0171
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)7,(GTTTTT)3
Primer 1PGML0171_F: GGCACGAATAATATGCATCAA
Primer 2PGML0171_R: CGTCCTTGCAGATGTTTCAA
Product Length275
Publication[view all]
CommentBAC_ID=FITB7812.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:61701095..61701365 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:54032878..54033151 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:54171414..54171671 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:57309720..57310005 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:56320342..56320615 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:11134822..11135096 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:29743679..29743952 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:29847948..29848205 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:57396443..57396713 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:51968950..51969223 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:52076964..52077221 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:53043787..53044058 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:53148682..53148938 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Scaffold531supercontigScaffold531:177371..177648 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:61521598..61521868 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:54042032..54042305 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:54136570..54136827 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:60834796..60835066 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:57441384..57441663 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:53429922..53430195 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:53534933..53535190 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:57169212..57169497 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:58170417..58170702 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:53380875..53381142 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:53472910..53473164 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:61425791..61426070 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:55027905..55028178 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:55127224..55127482 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:57881742..57882021 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:61953410..61953680 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:55713800..55714073 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:55818809..55819066 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:56293014..56293288 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:57524772..57525045 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:49183218..49183492 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:60437540..60437813 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0171 ID=PGML0171; Name=PGML0171; organism=Gossypium raimondii; type=genetic_marker; length=275bp
GGCACGAATAATATGCATCAACCAATAAACATAAAGCAAATGAATAATAA
ATAAAATGAAAGACATATAAGTTTAATTGGCAATTTAAAAGAAATAATTA
AACGAATATCAAATAAAAATAATAATAATAATTGTTTTTGTTTTTGTTTT
TTTTTTAAGAATGAAATTTGAATTTAAAATGATTAAGGACCAAATTGGAG
TCTAAATAAAATCAATGGGTTAGATTTGAAATAAAAGAAAGCGATCTGGA
GCCAATTGAAACATCTGCAAGGACG