PGML0171, PGML0171 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0171
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)7,(GTTTTT)3
Primer 1PGML0171_F: GGCACGAATAATATGCATCAA
Primer 2PGML0171_R: CGTCCTTGCAGATGTTTCAA
Product Length275
Publication[view all]
CommentBAC_ID=FITB7812.x1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:61701095..61701365 +
D05chromosomeD05:54032878..54033151 +
D05chromosomeD05:54171414..54171671 +
CM018227.1chromosomeCM018227.1:57309720..57310005 -
D5_13chromosomeD5_13:56320342..56320615 +
D10_05chromosomeD10_05:11134822..11135096 -
Dt_chr9chromosomeDt_chr9:29743679..29743952 +
Dt_chr9chromosomeDt_chr9:29847948..29848205 +
D13chromosomeD13:57396443..57396713 +
D05chromosomeD05:51968950..51969223 +
D05chromosomeD05:52076964..52077221 +
Ghir_D05chromosomeGhir_D05:53043787..53044058 +
Ghir_D05chromosomeGhir_D05:53148682..53148938 +
Scaffold531supercontigScaffold531:177371..177648 -
D13chromosomeD13:61521598..61521868 +
D05chromosomeD05:54042032..54042305 +
D05chromosomeD05:54136570..54136827 +
D13chromosomeD13:60834796..60835066 +
D13chromosomeD13:57441384..57441663 +
D05chromosomeD05:53429922..53430195 +
D05chromosomeD05:53534933..53535190 +
Gbar_D13chromosomeGbar_D13:57169212..57169497 -
D13chromosomeD13:58170417..58170702 +
CM017627.1chromosomeCM017627.1:53380875..53381142 +
CM017627.1chromosomeCM017627.1:53472910..53473164 +
CM017661.1chromosomeCM017661.1:61425791..61426070 +
CM017653.1chromosomeCM017653.1:55027905..55028178 +
CM017653.1chromosomeCM017653.1:55127224..55127482 +
CM017713.1chromosomeCM017713.1:57881742..57882021 +
D13chromosomeD13:61953410..61953680 +
D05chromosomeD05:55713800..55714073 +
D05chromosomeD05:55818809..55819066 +
Chr13chromosomeChr13:56293014..56293288 +
Chr13chromosomeChr13:57524772..57525045 +
Chr09chromosomeChr09:49183218..49183492 +
Chr13chromosomeChr13:60437540..60437813 +
Sequence
>PGML0171 ID=PGML0171; Name=PGML0171; organism=Gossypium raimondii; type=genetic_marker; length=275bp
GGCACGAATAATATGCATCAACCAATAAACATAAAGCAAATGAATAATAA
ATAAAATGAAAGACATATAAGTTTAATTGGCAATTTAAAAGAAATAATTA
AACGAATATCAAATAAAAATAATAATAATAATTGTTTTTGTTTTTGTTTT
TTTTTTAAGAATGAAATTTGAATTTAAAATGATTAAGGACCAAATTGGAG
TCTAAATAAAATCAATGGGTTAGATTTGAAATAAAAGAAAGCGATCTGGA
GCCAATTGAAACATCTGCAAGGACG