PGML0167, PGML0167 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0167
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTAG)5
Primer 1PGML0167_F: AGCTGCAAGGAAATGTTTGG
Primer 2PGML0167_R: GAGAATCCCATGTGAAAGGC
Product Length209
Publication[view all]
CommentBAC_ID=FITB7884.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:8258484..8258688 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:8603258..8603451 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:7498879..7499083 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:7737132..7737325 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:56363614..56363822 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:8765158..8765351 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:57765766..57765971 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:142987633..142987844 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2214.1supercontigscaffold2214.1:107884..108077 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:52675240..52675444 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:8076736..8076940 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:7937238..7937431 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:7858990..7859194 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:7891753..7891946 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:7549791..7549995 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:7606469..7606662 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:7894864..7895068 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:8154326..8154519 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:7837660..7837864 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:8132943..8133136 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:8004419..8004623 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:7843460..7843653 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:7507556..7507760 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:7793675..7793868 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:8280098..8280302 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:7783634..7783827 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:8528272..8528476 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:8152306..8152499 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:7917801..7918005 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:7909365..7909558 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:8122426..8122630 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:8220382..8220575 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:123271207..123271400 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:122019757..122019950 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:7031707..7031911 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:98509514..98509719 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:7828558..7828763 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:5834394..5834599 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:5939663..5939868 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:7937236..7937440 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:5859079..5859368 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:6628715..6628926 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:10444513..10444718 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr03chromosomeChr03:193361127..193361332 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0167 ID=PGML0167; Name=PGML0167; organism=Gossypium raimondii; type=genetic_marker; length=209bp
AGCTGCAAGGAAATGTTTGGATTTTGTAACGGAGGTTAAAGGACAAAAGA
AAGGGCAATGATAAACTGCAAGACTACTTTTCAAAGAACAGCATTGGGGA
TGTGATTTATCATTGATGATGGATTCATAACATATATATATCCTAGCTAG
CTAGCTAGCTAGTTAGTGGTTAGGCCGCCTGCAAGCTAAGCCTTTCACAT
GGGATTCTC