PGML0165, PGML0165 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0165
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATA)5
Primer 1PGML0165_F: CCAATGTGACATCCAAGTGA
Primer 2PGML0165_R: TGGCATGCAAATGAAAGAAG
Product Length198
Publication[view all]
CommentBAC_ID=FITB7810.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:44308628..44308822 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:43193267..43193460 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:21491347..21491544 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:21892454..21892647 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr4chromosomeDt_chr4:235766..235960 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:35720521..35720715 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:42385428..42385622 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:45216627..45216822 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:26172095..26172289 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:45100255..45100449 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:44300502..44300696 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:42836449..42836643 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:42809702..42809895 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:44106615..44106808 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:43021254..43021448 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:44932762..44932955 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:44265347..44265540 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:45061005..45061199 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:40964795..40964990 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:32679016..32679209 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:23680601..23680795 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:34625434..34625624 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:28083391..28083584 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:43480583..43480777 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:30375949..30376143 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:23486421..23486613 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:30364170..30364365 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0165 ID=PGML0165; Name=PGML0165; organism=Gossypium raimondii; type=genetic_marker; length=198bp
CCAATGTGACATCCAAGTGATAATTCATATGTATGCTTTTATTAAAATCG
ATTATGAATAATAATAATAATAAATCTGAATTTGAAAAAAAAAAAAACCA
ATATTTACTGTTATTCCAAAGACTTTTGAAGTTGTGCAAATAGGCCAACC
AAAAAGAACTTATTTAGTTTTTAATTTCCTTCTTTCATTTGCATGCCA