PGML0158, PGML0158 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0158
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ACCA)4
Primer 1PGML0158_F: TGCATCACATCATATGCATTAAA
Primer 2PGML0158_R: TGTTTCTTGACTTTGCACCG
Product Length126
Publication[view all]
CommentBAC_ID=FITB10356.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:37355630..37355755 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D01chromosomeD01:36236816..36236941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:37990320..37990445 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018215.1chromosomeCM018215.1:35822644..35822769 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:32206415..32206540 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_01chromosomeD5_01:44704071..44704196 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:12327455..12327580 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:14084928..14085053 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:23917039..23917164 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:31430756..31430881 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D01chromosomeD01:33960921..33961046 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:37427736..37427861 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:35476939..35477064 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:38987741..38987866 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:36892278..36892403 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:38368059..38368184 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:36589279..36589404 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:37789605..37789730 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D01chromosomeD01:34964376..34964501 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:36406782..36406907 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:36232268..36232393 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:38981232..38981357 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D01chromosomeD01:36789960..36790085 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:37371103..37371228 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017623.1chromosomeCM017623.1:36531804..36531929 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:41262479..41262604 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017649.1chromosomeCM017649.1:36813743..36813868 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:38919704..38919829 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017701.1chromosomeCM017701.1:36205589..36205714 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:39456954..39457079 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D01chromosomeD01:36966908..36967033 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:40225285..40225409 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:35508753..35508877 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:48463289..48463414 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:35693293..35693418 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:33498699..33498824 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:33195422..33195547 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02_6025839chromosomeChr02_6025839:95..220 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A30PGML0158View
Sequence
>PGML0158 ID=PGML0158; Name=PGML0158; organism=Gossypium raimondii; type=genetic_marker; length=126bp
TGCATCACATCATATGCATTAAAGACTATAAAAAAAGAGTCTAATTCATT
AAAATTATTTCAGCTAATCTAGAAACCAACCAACCAACCAAACACCCTTA
CGACACCGGTGCAAAGTCAAGAAACA