PGML0147, PGML0147 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0147
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)11
Primer 1PGML0147_F: AGCATGTCACCCTTCGTTTC
Primer 2PGML0147_R: TGTAACACCCAACAGGTAGGC
Product Length312
Publication[view all]
CommentBAC_ID=FITB6888.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:8537839..8538140 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:7721494..7721794 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:8339262..8339571 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:36575682..36575983 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:85218637..85218945 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:40627323..40627624 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:8504447..8504748 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:8572384..8572685 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:8259409..8259710 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:8200113..8200414 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:8197927..8198228 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:8884411..8884711 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:9905465..9905764 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:7967695..7967994 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:7510972..7511271 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:8175248..8175547 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:8657339..8657640 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:8255144..8255455 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:7603449..7603748 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:6773299..6773598 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:7925558..7925855 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:7190257..7190558 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:4632118..4632415 -Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:70918040..70918350 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:6846382..6846694 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0147 ID=PGML0147; Name=PGML0147; organism=Gossypium raimondii; type=genetic_marker; length=312bp
AGCATGTCACCCTTCGTTTCGTAATATGTGTAGATATTAGGGCAACTTGT
AGCCTTAAACTTCTTTTTTATGTGGATAAAAACTCTTTAAATTTAGTTCA
AATTATAATCAAATGCATAAGACTAAATTGACCTTTTTCTATAAAAAGTT
TAGAATTATCAGAAGCTTGTTCTTATATATATATATATATATATATTGTG
ATTTCTCAGTAATACACTATGGAATTGTGGAATGGCTATTAAATTATTTT
GCACATACTTATAGTTGAATTCTCAAAAGGTTGGTCATCTAGCCTACCTG
TTGGGTGTTACA