PGML0133, PGML0133 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML0133
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(AATA)5
Primer 1	PGML0133_F: GAAATTTGTCTCCATCATCAAAGA
Primer 2	PGML0133_R: GCCCTTGGTCACTAACCCTT
Product Length	292
Publication	[view all]
Comment	BAC_ID=FITB6555.y2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D5_07	chromosome	D5_07:46429056..46429347 +	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
D10_07	chromosome	D10_07:5094087..5094319 -	Gossypium turneri (D10) genome NSF_v1_a2	n/a
Chr07	chromosome	Chr07:5044349..5044638 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr01	chromosome	Chr01:50882773..50883069 +	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr_01	chromosome	Chr_01:33752831..33753071 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr01	chromosome	Chr01:35562515..35562811 +	Gossypium aridum (D4) genome ISU_v1	n/a
Chr01	chromosome	Chr01:28064881..28065242 +	Gossypium gossypioides (D6) genome ISU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Sequence

>PGML0133 ID=PGML0133; Name=PGML0133; organism=Gossypium raimondii; type=genetic_marker; length=292bp
GAAATTTGTCTCCATCATCAAAGAAAAGGGTTTTTTTCTTTAAAAATTAA
TGTTTAAGTAATCAGATTCATTTTTCATAAGTCTCAAATTGTGGTAAAGA
AAATTAAAACAATATCAGCCTTAAATAAACAGAAAATAAATAAATAAATA
AATAATCCATCAAATACAATTAAATAAAAAAGGCCTAAATACAAATTGGA
TCTTTTTGAATTTTGCAACTTGAGTCCTTATTTATTTATTTGGACCAACC
TGTATTGATTTCATCTAATTTTAAGGGTTAGTGACCAAGGGC

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PGML0133, PGML0133 (genetic_marker) Gossypium raimondii