PGML0132, PGML0132 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0132
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAAAA)3
Primer 1PGML0132_F: TGTTACATTGATACCAAGTGAATGAT
Primer 2PGML0132_R: GAATTGGGCCATTCCTGTAA
Product Length310
Publication[view all]
CommentBAC_ID=FITB6531.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:217088..217398 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:201768..202078 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:304809..305117 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr7chromosomeDt_chr7:10080617..10080927 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:286246..286556 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:280249..280559 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:266504..266814 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:164145..164455 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:106626..106936 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:187201..187511 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:269363..269673 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:293505..293815 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:305713..306023 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:296145..296455 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:300812..301122 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:290040..290347 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:299878..300196 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:465587..465897 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:165332..165642 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:153408..153718 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0132 ID=PGML0132; Name=PGML0132; organism=Gossypium raimondii; type=genetic_marker; length=310bp
TGTTACATTGATACCAAGTGAATGATCTATTTTTATTTTAAAATGTCAAA
TCATGAATCTAATAGAAGAATTTTAATAGTGATAATAACTTGACTTAAAA
TTTTAAATTTGAAAAATAAAGGGACTAAATTTCTAAAAATAAAAATAAAA
AAATAACATTTAAATATATAGAATGTATATAGACTTAAAACATATTTTAA
CCTTCATATTTTTATACTATAATTTAAGGGCAAAATACCAATAAAAGCCC
TTTTTTTTAAATTACTGAAATGGGCCCGGTAAAAAATTAATTACAGGAAT
GGCCCAATTC