PGML0103, PGML0103 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0103
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AGTTTT)9
Primer 1PGML0103_F: TCTCCACACTTTCGTGGATTT
Primer 2PGML0103_R: TGGGTGGTACCCTTACCTTG
Product Length172
Publication[view all]
CommentBAC_ID=FITB7703.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:25656434..25656581 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:23983674..23983815 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:22751292..22751463 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:29886056..29886197 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr4chromosomeDt_chr4:16245462..16245609 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:23985361..23985508 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:24214926..24215073 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:30183818..30184122 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:23667312..23667459 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:23437401..23437548 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:23893620..23893767 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:30390757..30390895 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:23900111..23900252 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:24171416..24171557 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:24040198..24040339 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:25872374..25872527 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:24081005..24081146 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:24281493..24281640 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:22770207..22770378 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_04chromosomeChr_04:16697797..16697938 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:24428068..24428215 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:16355508..16355655 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:16227021..16227180 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A29.5PGML0103View
Sequence
>PGML0103 ID=PGML0103; Name=PGML0103; organism=Gossypium raimondii; type=genetic_marker; length=172bp
TCTCCACACTTTCGTGGATTTTTATCTTGTCCATTCAACCCTTTTCTGAA
AGCAATTGCAGTTTTAGTTTTAATTTTAGTTTTAGTTTTAGTTTTAGTTT
TAGTTTTTAGTTTTCAATCTCTAGTTATTTCTAGTGTATATATGAGATTT
GACAAGGTAAGGGTACCACCCA