g.raimondii_cottongen_reftransV1_0001141, g.raimondii_cottongen_reftransV1_0001141 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A0D2TDB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G040500 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 6.265e-72 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 3 Query: 123 MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNAG 677 MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSWLCLLFVLLLLAFAFWLYLNQSFTRFDRHWIRPSRYSSYERLVAIGLIVLGVLSPLYINKGTSELEPDEQPINFASWLPLLLLILTLAIATLLFCDRGCTKFDPNWIHRVGGSSAGILLVLLILAVVLKCKNAG Sbjct: 1 MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSWLCLLFVLLLLAFAFWLYLNQSFTRFDRHWIRPSRYSSYERLVAIGLIVLGVLSPLYINKGTSELEPDEQPINFASWLPLLLLILTLAIATLLFCDRGCTKFDPNWIHRVGGSSAGILLVLLILAVVLKCKNAG 185
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A061GJH6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037389 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 3.206e-42 Identity = 146/188 (77.66%), Postives = 159/188 (84.57%), Query Frame = 3 Query: 123 MEPRGACRSNRS-SFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKGT-SELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNAG 677 MEP CRS+RS S+EKWVAIVLT LAVVSPLYVN+K +E E EEQSMD SWL LL VLL+LAFAF LYLNQ FTR DRHWIR S SSYERLVAIGL+VLGV+SPLY N+ T SELEPDEQPINFASWLPLLLLIL LAIA L+CDR T+FDPNWIHRVGGSSAGILL+LL+LA VLKCK +G Sbjct: 1 MEPIAMCRSSRSCSYEKWVAIVLTILAVVSPLYVNRKSVSEAEFEEQSMDLASWLRLLLVLLILAFAFLLYLNQRFTRSDRHWIRSSSSSSYERLVAIGLVVLGVVSPLYTNRATVSELEPDEQPINFASWLPLLLLILILAIALSLYCDRSFTRFDPNWIHRVGGSSAGILLILLVLAFVLKCKASG 188
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.795e-13 Identity = 94/176 (53.41%), Postives = 126/176 (71.59%), Query Frame = 3 Query: 147 SNRSSFEKWVAIVLTFLAVVSPLYVNQKPT-ELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKG-TSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCK 668 S SS+EK V + L LAVVSPLY+N+ P + E++EQ ++ WL LL ++L+ A A LY ++ FTR R SSYE+ V +GL +L V+SPLYIN+ S+LE +EQPI+ +SWLPLLLL+L LAIA L+ D+ T+FDP WIHRVGGSS GI+++L+ILA+VLKCK Sbjct: 10 SRSSSYEKLVFVCLGLLAVVSPLYINRAPVIDPEVDEQPINLAPWLPLLPLVLIFAIALSLYTDRGFTR-------SRRISSYEKFVGLGLGLLAVVSPLYINRRPNSDLELEEQPIDLSSWLPLLLLLLILAIALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCK 178
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A067KG81_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07599 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.513e-11 Identity = 82/163 (50.31%), Postives = 111/163 (68.10%), Query Frame = 3 Query: 123 MEPRGACRSNRSS-FEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHR 602 MEP CRS RSS +E+ V + L LAV+SPLY+N++P ++ E +E+S+ TSWL LL +LL+LA Y+++ FT R S++SS+ERLV IGL +L V+SPLYIN + ++LE +EQPI ASWLPLL L L + IA L D+ +FDP WIHR Sbjct: 1 MEPIATCRSRRSSSYERLVLVGLGLLAVISPLYINRRPVSDPEDDEESISLTSWLPLLLLLLILAVVLSQYIDRGFT-------RTSKFSSFERLVGIGLALLAVISPLYINRRPETDLELEEQPIKVASWLPLLPLALIVIIALSLCLDQSLPRFDPYWIHR 156
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: G7I919_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g015490 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.292e-10 Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHR 602 R S++SS+ER+ AI L+VL V SPLYI+ + SELE DEQPI+ WLP+LL +L L I+ F D+ T+FD NWIHR Sbjct: 8 RGSKFSSFERVAAISLVVLAVASPLYIDHRSESELEDDEQPISVTLWLPMLLFVLVLVISLSAFLDKSFTRFDRNWIHR 86
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: G7I917_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g015470 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 5.135e-10 Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 3 Query: 369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674 R ++SSYER+ AI L+VL V SPLYI+ + SELE DEQPI+ WLP+LL +L L I+ F D+ T+FD NWIHRVGGSS GI+ +L++L +VLKCK + Sbjct: 8 RGHKFSSYERVAAISLVVLAVASPLYIDHRSESELEDDEQPISVTLWLPMLLFVLVLVISLSAFLDKSFTRFDRNWIHRVGGSSGGIVFILILLFLVLKCKAS 110
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 6.866e-10 Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3 Query: 369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674 R SR+SSYER+ AI L+VL V SPLYI+ + SELE +EQ ++FA WLPLLL +L +AIA F DR T+FD +WIHRVGGSS GI+L+L++L +VLKCK + Sbjct: 8 RKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKAS 110 HSP 2 Score: 58.9214 bits (141), Expect = 1.496e-7 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 3 Query: 123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWI 368 ME + R +R SS+E+ AI L LAV SPLY++ +P +ELE EEQS+ F WL LL +L++A A +L+++FTRFDRHWI Sbjct: 1 MELGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWI 84
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A0B2RVF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 6.866e-10 Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3 Query: 369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674 R SR+SSYER+ AI L+VL V SPLYI+ + SELE +EQ ++FA WLPLLL +L +AIA F DR T+FD +WIHRVGGSS GI+L+L++L +VLKCK + Sbjct: 8 RKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKAS 110 HSP 2 Score: 58.9214 bits (141), Expect = 1.496e-7 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 3 Query: 123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWI 368 ME + R +R SS+E+ AI L LAV SPLY++ +P +ELE EEQS+ F WL LL +L++A A +L+++FTRFDRHWI Sbjct: 1 MELGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWI 84
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: B9HD04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23710g PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 5.977e-9 Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 3 Query: 123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSS 389 MEP ACR++R SS EK VAI L LAVVSPL+++++P +E EL+E+S+ SW+ LL ++L+LA A LYL++SFTRFD +WI + SS Sbjct: 1 MEPIAACRTSRVSSCEKLVAIGLGLLAVVSPLFIDRRPVSESELDEESIILASWVPLLLLVLILATALSLYLDRSFTRFDPYWIHRAGGSS 91
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 7.955e-9 Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 3 Query: 369 RPSRYSSYERXXXXXXXXXXXXSPLYINKG-TSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674 R +R+SSYERL AIGL +L V+SPLYI++ + E D QPI+ SWLPLLL++L AI + DR ++FDP WIHRVGGSS GI+++L++LA+VLKCK + Sbjct: 8 RSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQPISLVSWLPLLLMVLIFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKAS 110 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 11
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BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001141 ID=g.raimondii_cottongen_reftransV1_0001141; Name=g.raimondii_cottongen_reftransV1_0001141; organism=Gossypium raimondii; type=contig; length=994bpback to top |