2016 Work Completed

  • [DATA] CottonGen RefTrans (of arboreum, barbadense, hirsutum, and raimondii) available (11/28/16)
  • [DATA] Cotton Trait Ontology is online available (10/31/16)
  • [TOOL] Updated JGI v2.0 G. raimondii and CGP-BGI v1.0 G. hirsutum to v20 of Pathway Tools (10/25/16)
  • Held CottonGen Steering Committee Meeting (10/21/16)
  • [TOOL] Added 48 maps to CMap (10/18/16)
  • [TOOL] Additional annotation data added to cotton species JBrowse and made available to download (10/14/16)
  • [DATA] Added CCRI new markers (13,967 SNPs and 126 InDels) to chado (8/30/16)
  • [WEB] 24 SNP VCF files from BYU Udall's Lab downloadable at Data Download/Genome Project SNP Data (8/30/16)
  • [DATA] Added 39,962 BYU SNPs with information from NCBI in chado (8/16/16)
  • [DATA] Added 32,113 new SNPs (UCD_Gh, DOW, TAMU_GH) to chado (8/8/16)
  • [DATA] Added 35,484 new TAMU_GlspSNPs to chado (8/5/16)
  • [DATA] Reloaded 1052 BYU SNPs using the new SNP template (7/29/16)
  • [DATA] Added 171 new TAMU_GH SNP primer and sequences in chado (7/21/16)
  • [DATA] Added 34,550 new TAMU_Gl SNPs in chado (7/21/16)
  • [DATA] Added 6396 new TAMU_tom and 6669 new TAMU_mus SNPs in chado (7/17/16)
  • [DATA] Added 24,829 new TAMU_arm SNPs in CottonGen (7/17/16)
  • [DATA] Added 14,613 new UCD_Gh SNPs in CottonGen (7/17/16)
  • [DATA] Reloaded 35,265 CIR SNPs using the new SNP template (7/7/16)
  • [DATA] Reloaded 66,230 NBRI SNPs using the new SNP template (7/7/16)
  • [DATA] Added TAMU CottonSNP63K AD genome intra species map (7,171 loci) in chado (6/30/16)
  • [DATA] Adde TAMU CottonSNP63K AD genome inter species map (19,191 loci) in chado (6/30/16)
  • [DATA] Added CSIRO MCU-5 × Siokra 1−4, RIL SNP map (1244 loci and 4 QTLs) in chado (6/20/16)
  • [DATA] Reloaded 40,796 CSIRO SNP sequences using the new SNP template (6/20/16)
  • [DATA] Added 974 new CSIRO SNPs that missed from CSIRO 2014 SNP dataset (5/21/16)
  • CottonGen presented at 2016-05 WCRC-6/ICGI 2016 Research Conference, Goiânia - Goiás, Brazil (5/3/16)
  • CottonGen released the first biannual Newsletter (5/3/16)
  • [DATA] TAMU CottonSNP63K AD genome inter species map (3T-F2, 19,191 loci) available on CottonGen CMap (4/29/16)
  • [DATA] TAMU CottonSNP63K AD genome intra species map (PS-F2, 7,171 loci) available on CottonGen CMap (4/29/16)
  • [TOOL] CottonCyc AD1-BGI pathways available on CottonGen (4/28/16)
  • [TOOL] CottonCyc D5-JGI pathways was updated by using PathwayTools version 19.5 (4/28/16)
  • [TOOL] GBrowse_syn available on CottonGen with data of synteny analysis between D5-JGI and A2-BGI (4/28/16)
  • [DATA] Added 10,521 new TAMU_Gb379 SNPs in chado (4/27/16)
  • [DATA] New cotton trait catergories in chado (4/27/16)
  • [DATA] G.barbadense 3-79 genome sequence and annotation data available in CottonGen JBrowse (4/25/16)
  • [DATA] Fixed problem on JGI-D5 protein homologies and updated links in Data Download (4/23/16)
  • [WEB] Added a new project page for TAMU Cotton63KSNP Array (4/22/16)
  • [DATA] G.barbadense 3-79 genome sequence with protein alignments and homologies available on Data Download (4/20/16)
  • [DATA] Fixed the problem on UCD SNP/InDel data caused by the system upgrade (4/20/16)
  • [DATA] Fixed the problem on USDA CFB SNP data caused by the system upgrade (4/18/16)
  • [DATA] UCD SNP/InDel and TM-1x3-79 map genotype data on Data Download (4/16/16)
  • [TOOL] A new AND/OR option in CottonGen Trait Search (4/11/16)
  • [DATA] Added ARS-CS NCGC SSR genotypic data, contains 204,776 genotypic scores from 104 SSRs screened on 1969 germplasm (4/8/16)
  • [DATA] CottonGen BLAST server sequence databases updated (3/10/16)
  • [DATA] G.barbadense 3-79 genome sequence with nucleotide (marker, unignen, transcript) alignments available on Data Download (2/29/16)
  • [DATA] G.barbadense 3-79 genome sequence and annotation data available on CottonGen BLAST servers (2/26/16)
  • [DATA] G.barbadense 3-79 genome sequence and annotation data available on CottonGen Data Download (2/19/16)
  • CottonGen presented at PAG XXIV Computer Demo, San Diego, California, USA (1/12/16)
  • CottonGen presented at Beltwide Cotton Conference, New Orleans, Louisiana, USA (1/7/16)