Skip to main content
Toggle navigation
Search form
Search
Species
arboreum
australe
barbadense
darwinii
herbaceum
hirsutum
kirkii
longicalyx
mustelinum
raimondii
thurberi
tomentosum
turneri
others
Data
Data Contributors
Data Overview
Data Download
Data Submission
Community Archives
Community Projects
Cotton Trait Ontology
Description of Sequence Datasets
Nomenclatures
Links to Variety Testing Data
Links to External Resources
Search
Search Contact
Search Genes and Transcripts
Search Genotype
Search Germplasm
Search Images
Search Map
Search Markers
Search Markers by Locus
Search Orthologs and Paralogs
Search Publications
Search QTL/GWAS
Search Sequences
Search Trait
Search Trait Descriptors
Search Trait Evaluation
MegaSearch
Tools
BIMS
BLAST+
CottonCyc
Expression Heatmap
JBrowse
Map Viewer
Primer3
Sequence Retrieval
Synteny Viewer
ICGI
ICGI Home
ICGI FAQ
ICGI News
Become an ICGI Member
Forgotten Account Details?
Membership
ICGI Conferences
ICGI Elections
ICGI List Archives
General
About CottonGen
Cite CottonGen
CottonGen Citations
Conferences
Data Contributors
Disclaimer
Employment
External Resources
Mailing Lists
Mailing List Archives
News Archive
Newsletters
Presentations
Steering Committee
Usage
Work Completed
Work in Progress
Help
Contact
User Manual
Video Tutorials
CottonGen FAQ
ICGI FAQ
Login
Cotton Cluster File Request
Submitted by
Anonymous (not verified)
on Fri, 10/13/2023 - 05:20
Name:
Kristan Piquet
Email Address:
43 Boulevard Albin Durand
Email Address:
43 Boulevard Albin Durand
Organization:
Piquet http://manthan.quest/ Piquet GbR
Acknowledgement:
0
Acknowledgement4:
0
Read more
about Cotton Cluster File Request
G. trilobum (D8) CRI v1.0 Genome (13 chrom. and 6 scaffolds)
Human-Readable Name
G. trilobum (D8) CRI v1.0 Genome (13 chrom. and 6 scaffolds)
Database Path
/mainlab/web/temp/db/cottongen/D8_CRI_v1.genomic.blast.fa
Database Type
nucleotide
FASTA Header Format
default
External Database
JBrowse for D8_CRI_v1
RegEx
/^(\S+).*/
Link-out Type
jbrowse
-- G. trilobum (D8) CRI v1.0 CDs (37,605)
Human-Readable Name
-- G. trilobum (D8) CRI v1.0 CDs (37,605)
Database Path
/mainlab/web/temp/db/cottongen/D8_CRI_v1.CDS.blast.fasta
Database Type
nucleotide
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
-- G. trilobum (D8) CRI v1.0 proteins (37,605)
Human-Readable Name
-- G. trilobum (D8) CRI v1.0 proteins (37,605)
Database Path
/mainlab/web/temp/db/cottongen/D8_CRI_v1.protein.blast.fasta
Database Type
protein
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
G. gossypioides (D6) CRI v1.0 Genome (13 chrom. and 5 scaffolds)
Human-Readable Name
G. gossypioides (D6) CRI v1.0 Genome (13 chrom. and 5 scaffolds)
Database Path
/mainlab/web/temp/db/cottongen/D6_CRI_v1.genomic.blast.fa
Database Type
nucleotide
FASTA Header Format
default
External Database
JBrowse for D6_CRI_v1
RegEx
/^(\S+).*/
Link-out Type
jbrowse
-- G. gossypioides (D6) CRI v1.0 CDs (39,601)
Human-Readable Name
-- G. gossypioides (D6) CRI v1.0 CDs (39,601)
Database Path
/mainlab/web/temp/db/cottongen/D6_CRI_v1.CDS.blast.fasta
Database Type
nucleotide
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
-- G. gossypioides (D6) CRI v1.0 proteins (39,601)
Human-Readable Name
-- G. gossypioides (D6) CRI v1.0 proteins (39,601)
Database Path
/mainlab/web/temp/db/cottongen/D6_CRI_v1.protein.blast.fasta
Database Type
protein
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
G. klotzschianum (D3-k) CRI v1.0 Genome (13 chrom. and 38 scaffolds)
Human-Readable Name
G. klotzschianum (D3-k) CRI v1.0 Genome (13 chrom. and 38 scaffolds)
Database Path
/mainlab/web/temp/db/cottongen/D3k_CRI_v1.genomic.blast.fa
Database Type
nucleotide
FASTA Header Format
default
External Database
JBrowse for D3d_CRI_v1.0
RegEx
/^(\S+).*/
Link-out Type
jbrowse
-- G. klotzschianum (D3-k) CRI v1.0 CDs (43,254)
Human-Readable Name
-- G. klotzschianum (D3-k) CRI v1.0 CDs (43,254)
Database Path
/mainlab/web/temp/db/cottongen/D3k_CRI_v1.CDS.blast.fasta
Database Type
nucleotide
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
-- G. klotzschianum (D3-k) CRI v1.0 proteins (43,254)
Human-Readable Name
-- G. klotzschianum (D3-k) CRI v1.0 proteins (43,254)
Database Path
/mainlab/web/temp/db/cottongen/D3k_CRI_v1.protein.blast.fasta
Database Type
protein
FASTA Header Format
default
External Database
CottonGen Database
RegEx
/^(\S+).*/
Link-out Type
link
previous
…
6
7
8
9
10
11
12
13
14
…
next