BIMS breeders training at 2019 Cotton Beltwide Conference (12/11/18)

Title:  CottonGen BIMS Training Workshop at Cotton Beltwide Conference, New Orleans, January 8-10, 2019 

-- G. barbadense HAU v2.0 proteins (109,778)

Human-Readable Name-- G. barbadense HAU v2.0 proteins (109,778)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HAU_v2.0.peptide.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseJBrowse for G.barbadense_HAU_v2.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. barbadense HAU v2.0 CDS (109,778)

Human-Readable Name-- G. barbadense HAU v2.0 CDS (109,778)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HAU_v2.0.cds.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. barbadense HAU v2.0 Genome (26 chrom. and 3,006 scaffolds)

Human-Readable NameG. barbadense HAU v2.0 Genome (26 chrom. and 3,006 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.barbadense_HAU_v2.0.genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for G.barbadense_HAU_v2.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum HAU v1.0 proteins (115,835)

Human-Readable Name-- G. hirsutum HAU v1.0 proteins (115,835)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_HAU_v1.0.peptide.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseJBrowse for G.hirsutum_HAU_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum HAU v1.0 CDS (115,835)

Human-Readable Name-- G. hirsutum HAU v1.0 CDS (115,835)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_HAU_v1.0.cds.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum HAU v1.0 Genome (26 chrom. and 2,164 scaffolds)

Human-Readable NameG. hirsutum HAU v1.0 Genome (26 chrom. and 2,164 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_HAU_v1.0.genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for G.hirsutum_HAU_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

Reference genomes of two allotetraploid cultivars published (12/3/18)

Reference genomes of two allotetraploid cultivars, contributed by Huazhong Agricultural University, China, Published in Natural Genetics on 03 December 2018. Data available at CottonGen JBrowse and CottonGen BLAST

Title: Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

BLAST databases updated (12/1/18)

Sequence data on the BLAST server has been updated. Updated sequence data sets include markers in CottonGen (522,483), UniProtKB proteins (257,455), GenBank proteins (401, 767) and Nucleotides (374,401). (12/01/18)

New QTL, marker, and phenotype data added for 6 papers (11/2/18)

New QTL (439), trait score (294) and marker (706) from 6 peer-reviewed paper (pub_id: 14685, 19662, 19754, 19765, 19906, 20013) added in CottonGen (11/2/18)