Cottongen

-- G. thurberi D1-5 CRI v1.0 CDs (41,316)

Human-Readable Name	-- G. thurberi D1-5 CRI v1.0 CDs (41,316)
Database Path	/mainlab/web/temp/db/cottongen/G.thurberi_D1_CRI_v1.0.transcripts.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. thurberi D1-5 CRI v1.0 proteins (41,316)
Database Path	/mainlab/web/temp/db/cottongen/G.thurberi_D1_CRI_v1.0.pep.faa
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. davidsonii D3d-8 CRI v1.0 CDs (41,471)
Database Path	/mainlab/web/temp/db/cottongen/G.davidsonii_D3d_CRI_v1.0.transcripts.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. davidsonii D3d-8 CRI v1.0 proteins (41,471)
Database Path	/mainlab/web/temp/db/cottongen/G.davidsonii_D3d_CRI_v1.0.pep.faa
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	G. davidsonii D3d-8 CRI v1.0 Genome (13 chrom. and 14 scaffolds)
Database Path	/mainlab/web/temp/db/cottongen/G.davidsonii_D3d_CRI_v1.0_genome.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for D3d_CRI_v1.0
RegEx	/^(\S+).*/
Link-out Type	jbrowse

Human-Readable Name	G. aridum D4 ISU v1.0 Genome (13 chrom. and 2,289 scaffolds)
Database Path	/mainlab/web/temp/db/cottongen/G.aridum_D4_ISU_v1.0_genome.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for D4_ISU_v1.0
RegEx	/^(\S+).*/
Link-out Type	jbrowse

Human-Readable Name	-- G. aridum D4 ISU v1.0 CDs (29,559)
Database Path	/mainlab/web/temp/db/cottongen/G.aridum_D4_ISU_v1.0.transcripts.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. aridum D4 ISU v1.0 proteins (29,559)
Database Path	/mainlab/web/temp/db/cottongen/G.aridum_D4_ISU_v1.0.pep.faa
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

New Gossypium thurberi (D1-5) and Gossypium davidsonii (D3D-8) genome and annotation data (Yang, et al. 2021) available.

To view and download Gossypium thurberi (D1-5) genome data, go to: https://www.cottongen.org/species/Gossypium_thurberi/CRI_D1-5

Genome comparison view added in MapViewer. It provides:

1. Marker correspondence view between genetic map and genome scaffold/chromosome, linking to JBrowse

2. Dot plot and Correspondence Matrix for genome comparison when genome enabled in the control panel

3. Downloadable table for marker correspondence with genetic maps and genomes