CottonGen annotations added to D5 and D6 ISU assemblies (8/21)

 CottonGen annotations are added to G. raimondii (D5, 'D5-8' ISU_v1) and G. gossypioides (D6, ISU_v1) genome.  The annotation includes functional analysis, protein homologies, marker and trans alignments.

Cotton Cluster File Request

Name: 
Penni Delatte
Email Address: 
Holmatun 14
Email Address: 
Holmatun 14
Organization: 
Baskino 777 Смотреть фильмы онлайн & Delatte GmbH
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Julieta Balfe
Email Address: 
45 Oxford Rd
Email Address: 
45 Oxford Rd
Organization: 
Balfe https://www.babytrekking.it/latemar-panorama-obereggen/ & Balfe Solutions
Acknowledgement: 
0
Acknowledgement4: 
0

Cotton Cluster File Request

Name: 
Dorthea Pinto
Email Address: 
Via Nazionale 4
Email Address: 
Via Nazionale 4
Organization: 
Jensvoegele & Pinto mbH
Acknowledgement: 
0
Acknowledgement4: 
0

-- G. stocksii E1 NSF v1.0 CDs (37,889)

Human-Readable Name-- G. stocksii E1 NSF v1.0 CDs (37,889)
Database Path/mainlab/web/temp/db/cottongen/Gosto.transcripts.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. stocksii E1 NSF v1.0 proteins (37,889)

Human-Readable Name-- G. stocksii E1 NSF v1.0 proteins (37,889)
Database Path/mainlab/web/temp/db/cottongen/Gosto.proteins.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. stocksii E1 NSF v1.0 Genome (13 chrom.)

Human-Readable NameG. stocksii E1 NSF v1.0 Genome (13 chrom.)
Database Path/mainlab/web/temp/db/cottongen/Gosto.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for E1_NSF_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

G. rotundifolium K12 HAU v1.0 Genome (13 chrom. and 2,287 scaffolds)

Human-Readable NameG. rotundifolium K12 HAU v1.0 Genome (13 chrom. and 2,287 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.rotundifolium_HAU_K12_v1.0_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for K12_HAU_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. rotundifolium K12 HAU v1.0 CDs (41,590)

Human-Readable Name-- G. rotundifolium K12 HAU v1.0 CDs (41,590)
Database Path/mainlab/web/temp/db/cottongen/G.rotundifolium_HAU_K12_v1.0.transcripts.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. rotundifolium K12 HAU v1.0 proteins (41,590)

Human-Readable Name-- G. rotundifolium K12 HAU v1.0 proteins (41,590)
Database Path/mainlab/web/temp/db/cottongen/G.rotundifolium_HAU_K12_v1.0.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink