New SNP63K PeeDee lines genotype data available (5/22)

New SNP63K PeeDee lines genotype data from a recent publication (Billings, et al., 2021) added. 

The data can be accessed/searched via 'Search Genotype/SNP Genotype' 

New fiber yield and quality, oil and protein content data added (5/22)

New 2600 fiber yield and quality & oil and protein content data from RBTN available and online searchable.

 

Cotton Cluster File Request

Submitted by Anonymous (not verified) on Mon, 05/23/2022 - 12:50
Name: 
Pamela Christian
Email Address: 
Knesebeckstra?E 54
Email Address: 
Knesebeckstra?E 54
Organization: 
Christian author.today Christian Holding
Acknowledgement: 
0
Acknowledgement4: 
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G. davidsonii D3d-27 ISU v1.0 Genome (13 chrom. and 3186 scaffolds)

Human-Readable NameG. davidsonii D3d-27 ISU v1.0 Genome (13 chrom. and 3186 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/D3d_ISU_sublib.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for D3d ISU v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. davidsonii D3d-27 ISU v1.0 CDs (34,870)

Human-Readable Name-- G. davidsonii D3d-27 ISU v1.0 CDs (34,870)
Database Path/mainlab/web/temp/db/cottongen/D3d_ISU_transcript.mod.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. davidsonii (D3d-27) ISU v1.0 proteins (34,870)

Human-Readable Name-- G. davidsonii (D3d-27) ISU v1.0 proteins (34,870)
Database Path/mainlab/web/temp/db/cottongen/D3d_ISU_protein.mod.fa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

CottonGen annotations added to AD1 NDM-8 genome (4/22)

CottonGen annotations added to Gossypium hirsutum 'NDM-8' genome HEAU v1. (Ma, et al., 2021). The annotation includes functional analysis, protein homologies, markers and CottonGen RefTran alignments.

New SNP marker and genome locations available (4/22)

Over 77K NAU_NBI SNP markers and positions on TM1 genome available.  Data can be accessed via Search Markers Or MegaSearch "Marker".

G. klotzschianum D3-k ISU v1.0 Genome (13 chrom. and 2534 scaffolds)

Human-Readable NameG. klotzschianum D3-k ISU v1.0 Genome (13 chrom. and 2534 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/D3k_ISU_sublib.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for D3k ISU v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse