RBTN 2023 fiber traits data added and searchable (11/24)

The 2023 RBTN fiber trait data was added to CottonGen.

The data contains 18 fiber trait descriptors (7 were newly constructed from the HVI fibrogram) of 20 germplasm collected from 10 different locations within the United States in 2023.

The data can be searchable via CottonGen's 'Search Trait Evaluation' or 'Search Trait Descriptors'.

 

-- G. hirsutum (AD1) 'TM-1' HAU v2.0 proteins (202,763)

Human-Readable Name-- G. hirsutum (AD1) 'TM-1' HAU v2.0 proteins (202,763)
Database Path/mainlab/web/temp/db/cottongen/AD1_TM1_HAU_v2.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'TM-1' HAU v2.0 CDs (202,786)

Human-Readable Name-- G. hirsutum (AD1) 'TM-1' HAU v2.0 CDs (202,786)
Database Path/mainlab/web/temp/db/cottongen/AD1_TM1_HAU_v2.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'TM-1' HAU v2.0 Genome (26 chrom. 556 scaffolds)

Human-Readable NameG. hirsutum (AD1) 'TM-1' HAU v2.0 Genome (26 chrom. 556 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/AD1_TM1_HAU_v2.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_TM1_HAU_v2
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 proteins (53,167)

Human-Readable Name-- G. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 proteins (53,167)
Database Path/mainlab/web/temp/db/cottongen/Graimondii_D5-3_Telomere-to-Telomere.v1.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 CDs (53,167)

Human-Readable Name-- G. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 CDs (53,167)
Database Path/mainlab/web/temp/db/cottongen/Graimondii_D5-3_Telomere-to-Telomere.v1.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 Genome (13 chrom.)

Human-Readable NameG. raimondii (D5) 'D5-3' Telomere-to-Telomere PKU v1.0 Genome (13 chrom.)
Database Path/mainlab/web/temp/db/cottongen/Graimondii_D5-3_Telomere-to-Telomere.v1.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Graimondii_D5-3_Telomere-to-Telomere.PKU.v1
RegEx/^(\S+).*/
Link-out Typejbrowse