Project Information

The 50K Cotton SNP chip on the Affymetrix-Axiom platform with financial support from DBT (Govt. of India).

New map, QTL and phenotype data available (9/22)

An interspecies genetic map developed based on the cross of between two Indian cultivars with 88 QTLs of 15 yield component and fiber quality traits and phenotype data available. (9/30/22)

Add Standard LG/Chromosome Names to enhance data queries (9/22)

Standardized Names of Linkage Group (of genetic maps) and Chromosome (of whole genomes) have been added in MegaSearchs' Gene, Marker, QTL searches.  These standardized names allow users to find genes/markers/QTLs that are located on the same chromosome/linkage group as well as on different genetic maps or genomes.  Below is an example of using standardized names in MegaSearch QTL:

Example: To find seed cotton yield QTLs from tetraploid genetic maps chromosome 7 (At.07).

-- G. tomentosum (AD3) HAU v1.0 proteins (72,648)

Human-Readable Name-- G. tomentosum (AD3) HAU v1.0 proteins (72,648)
Database Path/mainlab/web/temp/db/cottongen/Gossypium_tomentosum.gene.pep
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink