Ortholog page added to gene/mRNA page (3/23)


Ortholog page added to gene/mRNA page as a separate tab 'ortholog/paralogs', which makes that data much more accessible.

2023 Vote for ICGI Amendment Closed (3/26/23)

The 2023 Vote for three Amendment on ICGI Constitution and By-laws closeed on 3/26/2023.

G.ekmanianum (AD6), G.stephensii (AD7) genome data available (3/23)

Gossypium ekmanianum (AD6) and Gossypium stephensii (AD7) genomes and annotations are available at CottonGen. The data are contributed by CRI-CAAS China (Peng, et al., 2022). 

Click below links to view and/or access the data:

G. arboreum (A2) 'SXY1' HAU v2.0 Genome (13 chrom. and 935 scaffolds)

Human-Readable NameG. arboreum (A2) 'SXY1' HAU v2.0 Genome (13 chrom. and 935 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/A2_HAU_genomic_v2.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. arboreum (A2) 'SXY1' HAU v2.0 CDs (49,176)

Human-Readable Name-- G. arboreum (A2) 'SXY1' HAU v2.0 CDs (49,176)
Database Path/mainlab/web/temp/db/cottongen/A2_HAU_cds_v2.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. arboreum (A2) 'SXY1' HAU v2.0 Genome (13 chrom. and 935 scaffolds)

Human-Readable NameG. arboreum (A2) 'SXY1' HAU v2.0 Genome (13 chrom. and 935 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/A2_HAU_genomic_v2.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for A2 HAU v2.0
RegEx/^(\S+).*/
Link-out Typejbrowse

G. raimondii (D5) 'GPD5lz' HAU v1.0 genome (13 chrom. and 276 scaffolds)

Human-Readable NameG. raimondii (D5) 'GPD5lz' HAU v1.0 genome (13 chrom. and 276 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.raimondii_D5.lz_HAU_v1_genomic.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for D5_HAU.lz_v1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. raimondii (D5) 'GPD5lz' HAU v1.0 CDs (63,476)

Human-Readable Name-- G. raimondii (D5) 'GPD5lz' HAU v1.0 CDs (63,476)
Database Path/mainlab/web/temp/db/cottongen/G.raimondii_D5.lz_HAU_v1_rna.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. raimondii (D5) 'GPD5lz' HAU v1.0 proteins (50,451)

Human-Readable Name-- G. raimondii (D5) 'GPD5lz' HAU v1.0 proteins (50,451)
Database Path/mainlab/web/temp/db/cottongen/G.raimondii_D5.lz_HAU_v1_protein.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink