Cottongen

CottonGen functional annotations add AD2 'Gb_M210936' genome (4/24)

CottonGen functional annotations added to Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1. (ref. Wang, 2023)

The CottonGen annotations include:

Read more about CottonGen functional annotations add AD2 'Gb_M210936' genome (4/24)

-- G. hirsutum (AD1) 'UA48' v1.1 proteins (113,741)

Human-Readable Name	-- G. hirsutum (AD1) 'UA48' v1.1 proteins (113,741)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.protein.blast.fasta
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

-- G. hirsutum (AD1) 'UA48' v1.1 CDs (113,741)

Human-Readable Name	-- G. hirsutum (AD1) 'UA48' v1.1 CDs (113,741)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.transcripts.blast.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

G. hirsutum (AD1) 'UA48' v1.1 Genome (26 chrom. and 834 scaffolds)

Human-Readable Name	G. hirsutum (AD1) 'UA48' v1.1 Genome (26 chrom. and 834 scaffolds)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUA48_569_v1.1.genomic.blast.fa
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for GhirsutumUA48_569_v1.1
RegEx	/^(\S+).*/
Link-out Type	jbrowse

-- G. hirsutum (AD1) 'UGA230' v1.1 proteins (113,260)

Human-Readable Name	-- G. hirsutum (AD1) 'UGA230' v1.1 proteins (113,260)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.protein.blast.fasta
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

-- G. hirsutum (AD1) 'UGA230' v1.1 CDs (113,260)

Human-Readable Name	-- G. hirsutum (AD1) 'UGA230' v1.1 CDs (113,260)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.transcripts.blast.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

G. hirsutum (AD1) 'UGA230' v1.1 Genome (26 chrom. and 141 scaffolds)

Human-Readable Name	G. hirsutum (AD1) 'UGA230' v1.1 Genome (26 chrom. and 141 scaffolds)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumUGA230_568_v1.1.genomic.blast.fa
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for GhirsutumUGA230_568_v1.1
RegEx	/^(\S+).*/
Link-out Type	jbrowse

-- G. hirsutum (AD1) 'CSX8308' v1.1 proteins (113,,264)

Human-Readable Name	-- G. hirsutum (AD1) 'CSX8308' v1.1 proteins (113,,264)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumCSX8308_570_v1.1.protein.blast.fasta
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

-- G. hirsutum (AD1) 'CSX8308' v1.1 CDs (113,264)

Human-Readable Name	-- G. hirsutum (AD1) 'CSX8308' v1.1 CDs (113,264)
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumCSX8308_570_v1.1.transcripts.blast.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

G. hirsutum (AD1) 'CSX8308' genome HGS_v1.1

Human-Readable Name	G. hirsutum (AD1) 'CSX8308' genome HGS_v1.1
Database Path	/mainlab/web/temp/db/cottongen/GhirsutumCSX8308_570_v1.1.genomic.blast.fa
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for GhirsutumCSX8308_570_HGS_v1.1
RegEx	/^(\S+).*/
Link-out Type	jbrowse

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