Cottongen

Three wild species map datasets available (4/25)

Three new wild species map datasets with marker and or phenotype data are available. They are (click on green to view details):

Human-Readable Name	-- G. hirsutum (AD1) 'ZM113' CRI v1.0 proteins (84,311)
Database Path	/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.protein.blast.fasta
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. hirsutum (AD1) 'ZM113' CRI v1.0 CDs (84,311)
Database Path	/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.CDS.blast.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	G. hirsutum (AD1) 'ZM113' CRI v1.0 Genome (26 chrom.)
Database Path	/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.genomic.blast.fa
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for AD1_ZM113_T2T-CRI_v1.0
RegEx	/^(\S+).*/
Link-out Type	jbrowse

Human-Readable Name	-- G. hirsutum (AD1) 'EM22' HAU v1.0 proteins (98,716)
Database Path	/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.protein.blast.fasta
Database Type	protein
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	-- G. hirsutum (AD1) 'EM22' HAU v1.0 CDs (98,716)
Database Path	/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.CDS.blast.fasta
Database Type	nucleotide
FASTA Header Format	default
External Database	CottonGen Database
RegEx	/^(\S+).*/
Link-out Type	link

Human-Readable Name	G. hirsutum (AD1) 'EM22' HAU v1.0 Genome (26 chrom. 71 scaffolds)
Database Path	/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.genomic.blast.fa
Database Type	nucleotide
FASTA Header Format	default
External Database	JBrowse for AD1_HAU_EM22_v1.0
RegEx	/^(\S+).*/
Link-out Type	jbrowse

Three new How-to Use BIMS videos are available at CottonGen. Click the link below to view:

HAU's 50 genomes' (15 G. arboreum and 35 G. hirsutum) assembly and annotation data are available at CottonGen.

Per ICGI bylaws, elections for the ICGI overall and Workgroup Co-Chairs will be held biennially.