The April 2025 CottonGen Newsletter available (4/25)

The April 2025 CottonGen Newsletter is issued to inform users of new imported data during the past three months, and an example of how to use markers associated with traits and the markers' genome location in CottonGen.

-- G. hirsutum (AD1) 'ZM113' CRI v1.0 proteins (84,311)

Human-Readable Name-- G. hirsutum (AD1) 'ZM113' CRI v1.0 proteins (84,311)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'ZM113' CRI v1.0 CDs (84,311)

Human-Readable Name-- G. hirsutum (AD1) 'ZM113' CRI v1.0 CDs (84,311)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'ZM113' CRI v1.0 Genome (26 chrom.)

Human-Readable NameG. hirsutum (AD1) 'ZM113' CRI v1.0 Genome (26 chrom.)
Database Path/mainlab/web/temp/db/cottongen/AD1_ZM113_T2T-CRI_v1.0.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_ZM113_T2T-CRI_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum (AD1) 'EM22' HAU v1.0 proteins (98,716)

Human-Readable Name-- G. hirsutum (AD1) 'EM22' HAU v1.0 proteins (98,716)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.protein.blast.fasta
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum (AD1) 'EM22' HAU v1.0 CDs (98,716)

Human-Readable Name-- G. hirsutum (AD1) 'EM22' HAU v1.0 CDs (98,716)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.CDS.blast.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum (AD1) 'EM22' HAU v1.0 Genome (26 chrom. 71 scaffolds)

Human-Readable NameG. hirsutum (AD1) 'EM22' HAU v1.0 Genome (26 chrom. 71 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/AD1_HAU_EM22_v1.0.genomic.blast.fa
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for AD1_HAU_EM22_v1.0
RegEx/^(\S+).*/
Link-out Typejbrowse

Three BIMS How-to Use videos available (4/25)

Three new How-to Use BIMS videos are available at CottonGen. Click the link below to view:

HAU 50 genomes' assembly and annotation data downloadable (4/25)

HAU's 50 genomes' (15 G. arboreum and 35 G. hirsutum) assembly and annotation data are available at CottonGen.