JBrowse

Try JBrowse2 with 30 genomes and give us feedback!
We are currently working on updating the JBrowse2 user documentation, but here are some resources to get you started: Written | Video

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Click the JBrowse List and select a genome, or click on a specific one from the table below and go to its JBrowse:

Tetraploids

Date Genome Home Page Reference Contact Germplasm Link to
      Gossypium hirsutum (AD1) genomes - click to view list        
      Gossypium barbadense (AD2) genome - click to view list        
    2020-04 Gossypium tomentosum (AD3) genome HAU_v1 Shen 2021 Lin, Zhong-Xu HAZU-2020-AD3 JBrowse
    2020-01 Gossypium tomentosum (AD3) genome HGS_v1.1 Chen 2020 Chen, Jeffrey Z. 7179.01 JBrowse
    2019-09 Gossypium mustelinum (AD4) genome JGI_v1.1 Chen 2020 Chen, Jeffrey Z. 408120.09 JBrowse
    2022-01 Gossypium darwinii (AD5) genome HGS_v1.1 Chen 2020 Chen, Jeffrey Z. AD5-032 JBrowse
    2023-03 Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1 Peng 2022 Liu, Fang AD602 JBrowse
    2023-03 Gossypium stephensii (AD7) 'AD701' genome CRI_v1 Peng 2022 Liu, Fang AD701 JBrowse

 

Diploids

Date Genome Home Page Reference Contact Germplasm Link to
    2024-05 Kokia cookei 'WAI 16c69' genome ISU_v1 Kayal 2024 Grover, Corrinne E. WAI 16c69 JBrowse
    2024-05 Kokia drynarioides genome ISU_v1 Kayal 2024 Grover, Corrinne E. JFW-HI JBrowse
    2024-05 Kokia kauaiensis 'WAI 19s9' genome ISU_v1 Kayal 2024 Grover, Corrinne E. WAI 19s9 JBrowse
    2019-02 Gossypioides kirkii genome ISU_v3_a3 Udall 2019 Udall, Joshua A.   JBrowse
      Gossypium herbaceum (A1) genome - click to view list        
      Gossypium arboreum (A2) genome - click to view list        
    2023-09 Gossypium anomalum (B1) genome HAU_v1 Wang M 2022 Zhang, Xian-Long GPB1lz JBrowse
    2022-07 Gossypium anomalum (B1) genome JAAS_v1.2_a1.1 Xu Z 2022 Shen, Xin-Lian   JBrowse
    2021-08 Gossypium anomalum (B1) genome NSF_v1 Grover 2021 Udall, Joshua A.   JBrowse
    2023-09 Gossypium sturtianum (C1) genome HAU_v1 Wang M 2022 Zhang, Xian-Long GPC1lz JBrowse
    2021-07 Gossypium thurberi (D1-5) genome CRI_v1 Yang Z 2021 Li, Fu-Guang D1-5 JBrowse
    2019-04 Gossypium thurberi (D1-35) genome ISU_v1 Grover 2019 Grover, Corrinne E. D1-35 JBrowse
    2021-01 Gossypium armourianum (D2-1) genome ISU_v1 Grover 2019 Grover, Corrinne E. D21-6 JBrowse
    2023-10 Gossypium harknessii (D2-2) genome CRI_v1 Xu Y 2023 Liu, Fang   JBrowse
    2021-02 Gossypium harknessii (D2-2) genome ISU_v1 Grover 2019 Grover, Corrinne E.   JBrowse
    2021-07 Gossypium davidsonii (D3d-8) genome CRI_v1 Yang Z 2021 Li, Fu-Guang   JBrowse
    2021-02 Gossypium davidsonii (D3d-27) genome ISU_v1 Grover 2019 Grover, Corrinne E. D3D-27 JBrowse
    2023-10 Gossypium klotzschianum (D3-k) genome CRI_v1 Yang Z 2021 Li, Fu-Guang D3D-8 JBrowse
    2021-02 Gossypium klotzschianum (D3-k) genome ISU_v1 Grover 2019 Grover, Corrinne E. D3K-57 JBrowse
    2021-02 Gossypium aridum (D4) genome ISU_v1 Grover 2019 Grover, Corrinne E. D4-185 JBrowse
      Gossypium raimondii (D5) genomes - click to view list        
    2023-10 Gossypium gossypioides (D6) genome CRI_v1 Xu Y 2023 Liu, Fang   JBrowse
    2021-02 Gossypium gossypioides (D6) genome ISU_v1 Grover 2019 Grover, Corrinne E. D6-5 JBrowse
    2021-02 Gossypium lobatum (D7) genome ISU_v1 Grover 2019 Grover, Corrinne E. D7-157 JBrowse
    2023-10 Gossypium trilobum (D8) genome CRI_v1 Xu Y 2023 Liu, Fang   JBrowse
    2021-02 Gossypium trilobum (D8) genome ISU_v1 Grover 2019 Grover, Corrinne E. D8-8 JBrowse
    2021-02 Gossypium laxum (D9) genome ISU_v1 Grover 2019 Grover, Corrinne E. D9-4 JBrowse
    2019-07 Gossypium turneri (D10) genome NSF_v1_a2 Udall 2019 Udall, Joshua A. D10-3 JBrowse
    2021-02 Gossypium schwendimanii (D11) genome ISU_v1 Grover 2019 Grover, Corrinne E. D11-1 JBrowse
    2023-09 Gossypium stocksii (E1) genome HAU_v1 Wang M 2022 Zhang, Xian-Long GPE1lz JBrowse
    2022-10 Gossypium stocksii (E1) genome ZSTU_v1 Yu D 2021 Sun, Yu-Qiang   JBrowse
    2021-08 Gossypium stocksii (E1) genome NSF_v1 Grover 2021 Udall, Joshua A.   JBrowse
    2023-09 Gossypium longicalyx (F1) genome HAU_v1 Wang M 2022 Zhang, Xian-Long GPF1lz JBrowse
    2020-01 Gossypium longicalyx (F1) genome NSF_v1 Grover 2020 Udall, Joshua A. F1-1 JBrowse
    2023-09 Gossypium bickii (G1) genome HAU_v1 Wang M 2022 Zhang, Xian-Long GPG1lz JBrowse
    2022-08 Gossypium bickii (G1) genome JZU_v1 Sheng K 2022 Zhang, Tian-Zhen   JBrowse
    2019-10 Gossypium australe (G2) genome CRI_v1.1 Cai Y 2019 Liu, Fang G2-lz JBrowse
    2021-08 Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1 Wang, M 2021 Zhang, Xian-Long Grot K201 JBrowse
        
 
Chloroplast Genomes