Cottongen

Data Template


Template	haplotype_block	download

Headers


Column	Description
* haplotype_block	Name of the haplotype block.
genus	Genus of the haplotype block.
species	Species of the haplotype block.
trait_ontology_set	Name of the crop trait ontology (entered by the curator who loads the data into the database). If not provided, the site trait ontology will be used.
trait_name	Descriptive name for a trait, it should be one of the crop trait ontology and should match a term in 'Trait' sheet. Multiple traits, separated by comma or simi-colon, can be added.
* chromosome	Name of the chromosom.
genus_chromosome	Genus of the chromosome.
species_chromosome	Species of the chromosome.
start	The leftmost/maximal boundary. This is space-based (interbase) coordinates, counting from zero. So the starting position is substract by 1 and stored in featureloc.fmin. Please see the table definition of featureloc table in the Chado specification.
end	The rightmost/maximal boundary.
strand	The orientation/directionality of the location. Should be 0, -1 or +1.
reference	Pub ID of the haplotype block.
##property_name	Special columns (##) : followed by name of the custom property.

* Required field

cvterms


cv.name	cvterm.name
sequence	chromosome
sequence	contains
sequence	haplotype_block

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