Data Template
Templatehaplotype_block
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Headers
ColumnDescription
* haplotype_blockName of the haplotype block.
genusGenus of the haplotype block.
speciesSpecies of the haplotype block.
trait_nameDescriptive name for a trait, it should be one of the crop trait ontology and should match a term in 'Trait' sheet.
trait_ontology_setName of the crop trait ontology (entered by the curator who loads the data into the database). If not provided, the site trait ontology will be used.
* chromosomeName of the chromosom.
genus_chromosomeGenus of the chromosome.
species_chromosomeSpecies of the chromosome.
startThe leftmost/maximal boundary. This is space-based (interbase) coordinates, counting from zero. So the starting position is substract by 1 and stored in featureloc.fmin. Please see the table definition of featureloc table in the Chado specification.
endThe rightmost/maximal boundary.
strandThe orientation/directionality of the location. Should be 0, -1 or +1.
referencePub ID of the haplotype block.
* Required field
cvterms
cv.namecvterm.name
sequencechromosome
sequencecontains
sequencehaplotype_block