Cottongen

Data Template


Template	genotype	download

Headers


Column	Description
* dataset_name	Name of the genotyping dataset. It should match a dataset_name in 'Dataset' sheet.
* stock_name	Name of the stock genotyped. It should match a 'stock_name' of the 'Stock' sheet.
* genus	Genus of the stock.
* species	Species of the stock.
clone_ID	ID of a clone if known.
* marker	Name of the marker used for genotyping. It should match a marker_name in the 'Marker' sheet.
storage_ID	Any storage ID for the DNA sample.
plot	Field plot where the plant material was collected from.
row	Field row where the plant material was collected from.
position	Field position where the plant material was collected from.
collector	People who collected the plant material. It should match 'contact_name' in the Contact sheet. Multiple names can be added with a semicolon (;) in between.
collection_date	Date when the plant material was collected.
genotyping_date	Date when genotypying.
instrument	Any instrument used for genotyping.
size_standard	Date of the genotyping experiment.
data_year	Genotyping date if only year is known.
experimenter	Person who conducted genotyping. It should match 'contact_name' in the Contact sheet. Multiple names can be added with a semicolon (;) in between.
dye_color	Dye color used for genotyping.
comments	Any comments on the specific genotype (of a specific sample with a specific marker).
#alleleN (N should be an integer)	Special columns (#) : Enter# followed by alleleN (e.g. #allele1, #allele2, #allele3) as column headings, type allele in the cell. For missing data, could-be-null, confirmed null, use -, $, and $$, respectively.

* Required field

cvterms


cv.name	cvterm.name
MAIN	clone
MAIN	clone_of
MAIN	collection_date
MAIN	collector
MAIN	comments
MAIN	data_year
MAIN	dye_color
MAIN	genotyping
MAIN	genotyping_date
MAIN	instrument
MAIN	pick_date
MAIN	plot
MAIN	position
MAIN	row
MAIN	sample
MAIN	sample_id
MAIN	sample_of
MAIN	size_standard
MAIN	storage_id
sequence	allele
sequence	genetic_marker

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