Data Template
Template TypeQTL
Templateqtl_cotton
 download
Headers
ColumnDescription
* dataset_nameName of the QTL trait study, the dataset_name should exist in 'dataset_name' column of the 'Dataset' sheet.
* QTL_labelOfficial unique label of QTL given by the curator. Follow each database's naming convention.
published_symbolPublished Symbol for the QTL.
* genusThe genus of the phenotyping material.
* speciesThe species of the phenotyping material.
* trait_nameDescriptive name for trait, it should be one of the crop trait ontology and should match a term in 'Trait' sheet.
site_nameIt should match 'site_name' in the 'Site' sheet.
aliasOther names for the trait, multiple aliases, separated by a semicolon (;) can be added.
R2Fraction of the total variation explained by the QTLs.
LODQTL Likelihood of odds.
bayes_factorBayes factor.
additive_effectThe average phenotype effect of substituting a q allele for a Q allele.
dominance_effectThe deviation of the heterozygote phenotype from the mean of the homozygotes.
additivity_dominance_ratioThe average phenotype effect of substituting a q allele for a Q allele dominance effect The deviation of the heterozygote phenotype from the mean of the homozygotes.
directionThe direction of additive effect on the phenotype.
colocalized_markerMarker locus that is mapped within the interval defined by the QTL. Multiple loci can be added, separated by a semicolon (;).
neighboring_markerMarker locus that is mapped in the nearest flanking position outside the interval defined by the QTL. Used to estimate QTL position if no appropriate colocalized markers are found. Multiple loci can be added, separated by a semicolon (;).
screening_methodAny specific method for the phenotypic inspection.
commentsAny comments.
meanMean value of the phenotype (if one QTL has multiple mean values based on the condition and/or population, enter them in QTL_trait_Data sheet.
p_valuep-value.
kw_scorekw score.
variancevariance.
population_low_valueLowest phenotypic value.
population_high_valueMaximum phenotypic value.
referencepub_id of the QTL paper.
* Required field
cvterms
cv.namecvterm.name
MAINadditive_effect
MAINadditivity_dominance_ratio
MAINalias
MAINbayes_factor
MAINclone
MAINcomments
MAINdirection
MAINdominance_effect
MAINkw_score
MAINlod
MAINp_value
MAINpopulation_high_value
MAINpopulation_low_value
MAINpublished_symbol
MAINr2
MAINscreening_method
MAINsource
sequencegenetic_marker
sequenceheritable_phenotypic_marker
sequenceqtl
relationshipadjacent_to
relationshiplocated_in