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Data Template
Template
phenotype
download
Headers
Column
Description
*
dataset_name
Name of the phenotyping dataset. It should match a 'dataset_name' column entry in the 'Dataset' sheet.
*
stock_name
ID of the stock that has been phenotyped. It should match a 'stock_name' column entry in the 'Stock' sheet or 'progeny_name' column entry 'Progeny' sheet.
*
genus
Genus of the stock
*
species
Species of the stock
*
sample_ID
The ID of the smallest sample or sub-sample that was tested (Each row should have unique sample_ID). If there is no unique sample ID, users can concatenate a set of columns that gives a unique phenotypic value and those columns become required fields. For example, if a combination of dataset_name, ID, phenotyping_date is unique for the specific phenotype, those three can be concatenated with '_' in between.
clone_ID
ID of a spefic clone if available (eg. individual tree).
primary_order
The primary order of a sample
secondary_order
The secondary order of a sample
evaluator
Person who did the phenotyping. Multiple person can be entered with ';' in between. It should match 'contact_name' of the Contact sheet.
site_name
Site information where the stock for the phenotyping is planted. It should match 'site_name' in the 'Site' sheet.
rep
Any repetition number.
rootstock
Name of the rootstock if the plant is grafted to a rootstock. It should match a 'stock_name' column of the 'Stock' sheet.
plot
Plot name.
row
Row.
position
Position of the plant.
plant_date
Date of the planting.
data_year
Phenotyping date if only year is known.
evaluation_date
Date of phenotype evaluation.
pick_date
Date of the sample collection if the collection is done on a different date than the phenotype evaluation.
previous_entry
stock ID of the previous entry.
barcode
Barcode
fiber_pkg
Group of samples for phenotyping, can contain samples from multiple germplasm.
storage_time
Time between collection and phenotyping.
storage_regime
The condition of sample storage between the collection and phenotyping.
comments
Any comments for the phenotyping.
#descriptor_name
Special columns (#) : followed by descriptor name.
##property_name
Special columns (##) : followed by name of the custom property.
*
Required field
cvterms
cv.name
cvterm.name
MAIN
barcode
MAIN
clone
MAIN
clone_of
MAIN
comments
MAIN
evaluation_date
MAIN
fiber_pkg
MAIN
nd_geolocation_id
MAIN
phenotyping
MAIN
pick_date
MAIN
plant_date
MAIN
plot
MAIN
position
MAIN
previous_entry
MAIN
project_id
MAIN
row
MAIN
sample
MAIN
sample_of
MAIN
source
MAIN
storage_regime
MAIN
storage_time
BIMS_FIELD_BOOK
primary_order
BIMS_FIELD_BOOK
secondary_order
BIMS_FIELD_BOOK
unique_id
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