Cottongen

Data Template


Template	genome_position	download

Headers


Column	Description
* genome	Name of the whole genome assembly. It should match a 'name' column entry in the 'Analysis' sheet or analysis table in Chado.
* chromosome	Name of the chromosome (e.g. Chr1, Ch15).
* marker_qtl_mtl	Name of the marker, QTL, MTL or haplotype block. Please provide the detailed data in 'Marker', 'QTL', 'MTL' or 'Haplotype_Block' sheet.
* start	The leftmost/maximal boundary. This is space-based (interbase) coordinates, counting from zero. So the starting position is substract by 1 and stored in featureloc.fmin. Please see the table definition of featureloc table in the Chado specification.
* end	The rightmost/maximal boundary.
strand	Orientation of the location (should be 0, -1 or +1).
* reference	Pub ID of genome location. If the location is computationally generated by the database team, please add '##'.

* Required field

cvterms


cv.name	cvterm.name
MAIN	SNP_chip
MAIN	chr_name
MAIN	chr_number
MAIN	rs_id
MAIN	ss_id
sequence	associated_with
sequence	chromosome
sequence	genetic_marker
sequence	haplotype_block
sequence	heritable_phenotypic_marker
sequence	qtl
sequence	supercontig

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