Skip to main content
Toggle navigation
Search form
Search
Species
arboreum
australe
barbadense
darwinii
herbaceum
hirsutum
kirkii
longicalyx
mustelinum
raimondii
thurberi
tomentosum
turneri
others
Data
Data Contributors
Data Overview
Data Download
Data Submission
Community Archives
Community Projects
Cotton Trait Ontology
Description of Sequence Datasets
Nomenclatures
Links to Variety Testing Data
Links to External Resources
Search
Search Contact
Search Genes and Transcripts
Search Genotype
Search Germplasm
Search Images
Search Map
Search Markers
Search Markers by Locus
Search Orthologs and Paralogs
Search Publications
Search QTL/GWAS
Search Sequences
Search Trait
Search Trait Descriptors
Search Trait Evaluation
MegaSearch
Tools
BIMS
BLAST+
CottonCyc
Expression Heatmap
JBrowse
Map Viewer
Primer3
Sequence Retrieval
Synteny Viewer
ICGI
ICGI Home
ICGI FAQ
ICGI News
Become an ICGI Member
Forgotten Account Details?
Membership
ICGI Conferences
ICGI Elections
ICGI List Archives
General
About CottonGen
Cite CottonGen
CottonGen Citations
Conferences
Data Contributors
Disclaimer
Employment
External Resources
Mailing Lists
Mailing List Archives
News Archive
Newsletters
Presentations
Steering Committee
Usage
Work Completed
Work in Progress
Help
Contact
User Manual
Video Tutorials
CottonGen FAQ
ICGI FAQ
Login
MapViewer
Change Map
Short video tutorial
|
Text tutorial
Dot Plot
Select Reference Map:
Species
Gossypium arboreum
Gossypium arboreum x herbaceum
Gossypium barbadense
Gossypium barbadense x hirsutum
Gossypium herbaceum x arboreum
Gossypium hirsutum
Gossypium hirsutum x anomalum
Gossypium hirsutum x barbadense
Gossypium hirsutum x darwinii
Gossypium hirsutum x mustelinum
Gossypium hirsutum x tomentosum
Gossypium klotzschianum x davidsonii
Gossypium nelsonii x australe
Gossypium spp.
Gossypium trilobum x raimondii
Map
AD-genome wide Reference Map (2009)
MGG-293-793, MAGIC (2018)
Linkage Group
AD_ch01_At.01
AD_ch02_At.02
AD_ch03_At.03
AD_ch04_At.04
AD_ch05_At.05
AD_ch06_At.06
AD_ch07_At.07
AD_ch08_At.08
AD_ch09_At.09
AD_ch10_At.10
AD_ch11_At.11
AD_ch12_At.12
AD_ch13_At.13
AD_ch14_Dt.02
AD_ch15_Dt.01
AD_ch16_Dt.07
AD_ch17_Dt.03
AD_ch18_Dt.13
AD_ch19_Dt.05
AD_ch20_Dt.10
AD_ch21_Dt.11
AD_ch22_Dt.04
AD_ch23_Dt.09
AD_ch24_Dt.08
AD_ch25_Dt.06
AD_ch26_Dt.12
Submit
Select Comparison Map:
(View Correspondence Matrix)
Show comparison map
Download Table
Species
Gossypium barbadense x hirsutum
Gossypium hirsutum
Gossypium herbaceum x arboreum
Gossypium hirsutum x barbadense
Gossypium spp.
Gossypium trilobum x raimondii
Gossypium arboreum
Gossypium arboreum x herbaceum
Gossypium hirsutum x tomentosum
Gossypium hirsutum x anomalum
Gossypium hirsutum x darwinii
Gossypium hirsutum x mustelinum
Map
Pima S-7 x im, F2 (2007) (32)
Pima S-7 x n2, F2 (2007) (32)
Pima S-7 x Empire, F2 (2007) (22)
3-79 x NM24016, RIL (2008) (3)
Pima S7 x Acala 44, F2.V76 (2005) (1)
Linkage Group
AD_ch03_At.03 (15)
AD_ch12_At.12 (2)
AD_ch20_Dt.10 (2)
AD_ch17_Dt.03 (2)
AD_ch18_Dt.13 (2)
AD_ch16_Dt.07 (1)
AD_ch07_At.07 (1)
AD_ch19_Dt.05 (1)
AD_ch17_Dt.03 (1)
AD_ch13_At.13 (1)
AD_ch26_Dt.12 (1)
AD_ch08_At.08 (1)
AD_ch10_At.10 (1)
AD_ch14_Dt.02 (1)
Submit
Show genome view
Invert scaffold
Download Table
Whole Genome
Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
Gossypium anomalum (B1) genome NSF_v1
Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
Gossypioides kirkii genome ISU_v3
Gossypium turneri (D10) genome NSF_v1_a2
Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gossypium mustelinum (AD4) genome JGI_v1.1
Gossypium australe (G2) genome CRI_v1.1
Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Gossypium tomentosum (AD3) genome HGS_v1.1
Gossypium darwinii (AD5) genome HGS_v1.1
Gossypium longicalyx (F1) genome NSF_v1
Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Gossypium armourianum (D2-1) genome ISU_v1
Gossypium harknessii (D2-2) genome ISU_v1
Gossypium aridum (D4) genome ISU_v1
Gossypium gossypioides (D6) genome ISU_v1
Gossypium lobatum (D7) genome ISU_v1
Gossypium davidsonii (D3d-8) genome CRI_v1
Gossypium thurberi (D1-5) genome CRI_v1
Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Gossypium stocksii (E1) genome NSF_v1
Chromosome/Scaffold
A01_NBI-AD1_v1.1
A02_NBI-AD1_v1.1
A03_NBI-AD1_v1.1
A04_NBI-AD1_v1.1
A05_NBI-AD1_v1.1
A06_NBI-AD1_v1.1
A07_NBI-AD1_v1.1
A08_NBI-AD1_v1.1
A10_NBI-AD1_v1.1
A11_NBI-AD1_v1.1
A12_NBI-AD1_v1.1
D04_NBI-AD1_v1.1
D11_NBI-AD1_v1.1
scaffold506_A03_NBI-AD1_v1.1
scaffold515_A03_NBI-AD1_v1.1
scaffold557_A03_NBI-AD1_v1.1
scaffold626_A03_NBI-AD1_v1.1
scaffold734_A03_NBI-AD1_v1.1
scaffold841_A04_NBI-AD1_v1.1
scaffold909_A04_NBI-AD1_v1.1
scaffold913_A04_NBI-AD1_v1.1
scaffold1593_A06_NBI-AD1_v1.1
scaffold1882_A07_NBI-AD1_v1.1
scaffold2049_A08_NBI-AD1_v1.1
scaffold4946_NBI-AD1_v1.1
scaffold6071_NBI-AD1_v1.1
A13_NBI-AD1_v1.1
D01_NBI-AD1_v1.1
D03_NBI-AD1_v1.1
D05_NBI-AD1_v1.1
D07_NBI-AD1_v1.1
D08_NBI-AD1_v1.1
D10_NBI-AD1_v1.1
scaffold1099_A05_NBI-AD1_v1.1
scaffold3831_D02_NBI-AD1_v1.1
scaffold3866_D02_NBI-AD1_v1.1
scaffold4581_D12_NBI-AD1_v1.1
scaffold140563_NBI-AD1_v1.1
scaffold177443_NBI-AD1_v1.1
D02_NBI-AD1_v1.1
D13_NBI-AD1_v1.1
scaffold28583_NBI-AD1_v1.1
scaffold29468_NBI-AD1_v1.1
scaffold30222_NBI-AD1_v1.1
scaffold51830_NBI-AD1_v1.1
scaffold59231_NBI-AD1_v1.1
Submit
Display Settings:
Marker color
RFLP
SSR
SRAP
AFLP
gene marker
TRAP
IT-ISJ
QTL
gene
salmonPink
paleOrange
orange
redBrown
eggBlue
violetPurple
tealGreen
deepGreen
avocadoGreen
medGray
medGray2
black
blue
darkPurple
Submit
Reset
Marker visibility
RFLP
SSR
SRAP
AFLP
gene marker
TRAP
IT-ISJ
QTL
Show
Hide
Submit
Reset
Show ruler
Show marker position
Expand QTL
Submit