Diploid Genome A and D5

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  Sequencing Institute and Genome
Assembly- by sequencing project A1_WHU A1_USDAnew A2_BGI A2_CRI A2_WHU A2_HAU D5_BGI D5_JGI D5_NSF D5_ISU D5_HAU
FASTA Files                      
     * Chromosomes + Scaffolds 13+719 13+719.md5 13
13.md5
13+75,581 13+75,581.md5 13+4,503 13+4,503.md5 13+1256 13+1256.md5 13+935 13+935.md5 13+4434 13+4434.md5 13+1020 13+1020.md5 13 13.md5 13+94504 13+94504.md5 13+274 13+274.md5
GFF3 | EXCEL | TXT  Files                      
     * Chromosomes + Scaffolds     13+75,581       13+4434 13+4434.md5 13+1020 13+1020.md5 13    
Annotation - by sequencing project A1_WHU A1_USDAnew A2_BGI A2_CRI A2_WHU A2_HAU D5_BGI D5_JGI D5_NSF D5_ISU D5_HAU
FASTA Files                      
    * Predicted coding sequences 43,952   40,134 40,960 43,278 41,778 40,976 77,267 41.030 26,065 40,820
    * Predicted protein sequences 43,952   40,134 40,960 43,278 41,778 40,976 77,267 41,030 26,065 40,820
    * Predicted gene sequences               37,505      
GFF3 | EXCEL | TXT  Files                      
    * Predicted gene alignments FTP   FTP   FTP   FTP FTP      
    * Predicted gene with exon alignments       FTP   FTP   FTP FTP FTP FTP
Annotation - by CottonGen Team A1_WHU A1_USDAnew A2_BGI A2_CRI A2_WHU A2_HAU D5_BGI D5_JGI D5_NSF D5_ISU D5_HAU
GFF3 | EXCEL | TXT  files                      
* Functional                      
 - GO from InterProScan FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
 - IPR from InterProScan FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
 - Genes in KEGG Pathways FTP   FTP FTP FTP FTP FTP   FTP FTP FTP
 - Genes mapped to KEGG orthologs FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
* Marker Alignments                      
- RFLP-RAD (v. 11/18) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- SSR (v.11/18) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- SNP (v. 11/18) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- InDel (v.11/18) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
* Protein Homologies                    
- Arabidopsis thaliana Araport11 FTP   FTP FTP(tair10) FTP FTP FTP FTP FTP FTP FTP
- NCBI nr-all (m/yy = 5/18) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- Uniprot swissprot-all (1/19) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- Uniprot trembl-all (1/19) FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
* Unigene & Transcript Alignments                       
- G.arboreum RefTrans v1 FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- G.barbadense  RefTrans v1 FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- G.hirsutum  RefTrans v1 FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP
- G.raimondii  RefTrans v1 FTP   FTP FTP FTP FTP FTP FTP FTP FTP FTP