Peer-reviewed papers citing CottonGen in 2017 (77) with links to publications.
- Guo, Y., Pang, C., Jia, X., Ma, Q., Dou, L., Zhao, F., ... & Yu, S. (2017). An NAM domain gene, GhNAC79, improves resistance to drought stress in upland cotton. Frontiers in plant science, 8, 1657.
Cited By - Guo, Y., Dou, L., Evans, O., Pang, C., Wei, H., Song, M., ... & Yu, S. (2017). Identification of GT Factors in Response to Stresses and Leaf Senescence in Gossypium hirsutum L. Journal of Plant Growth Regulation, 36, 22-42.
Cited By - Zhu, T., Liang, C., Meng, Z., Sun, G., Meng, Z., Guo, S., & Zhang, R. (2017). CottonFGD: an integrated functional genomics database for cotton. BMC plant biology, 17(1), 1-9.
Cited By - Yang, Z., Gong, Q., Qin, W., Yang, Z., Cheng, Y., Lu, L., ... & Li, F. (2017). Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses. BMC Plant Biology, 17(1), 1-17.
Cited By - You, Q., Xu, W., Zhang, K., Zhang, L., Yi, X., Yao, D., ... & Su, Z. (2017). ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium. Nucleic acids research, 45(D1), D1090-D1099.
Cited By - Ruas, M., Guignon, V., Sempere, G., Sardos, J., Hueber, Y., Duvergey, H., ... & Rouard, M. (2017). MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database, 2017, bax046.
Cited By - Li, X., Liu, G., Geng, Y., Wu, M., Pei, W., Zhai, H., ... & Yu, J. (2017). A genome-wide analysis of the small auxin-up RNA (SAUR) gene family in cotton. BMC genomics, 18, 1-22.
Cited By - Li, X., Wu, M., Liu, G., Pei, W., Zhai, H., Yu, J., ... & Yu, S. (2017). Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton. BMC genomics, 18(1), 1-12.
Cited By - Dai, B., Guo, H., Huang, C., Ahmed, M. M., & Lin, Z. (2017). Identification and characterization of segregation distortion loci on cotton chromosome 18. Frontiers in plant science, 7, 2037.
Cited By - Wang, B., Draye, X., Zhuang, Z., Zhang, Z., Liu, M., Lubbers, E. L., ... & Chee, P. W. (2017). QTL analysis of cotton fiber length in advanced backcross populations derived from a cross between Gossypium hirsutum and G. mustelinum. Theoretical and Applied Genetics, 130, 1297-1308.
Cited By - Shen, C., Li, X., Zhang, R., & Lin, Z. (2017). Genome-wide recombination rate variation in a recombination map of cotton. PLoS One, 12(11), e0188682.
Cited By - Si, Z., Chen, H., Zhu, X., Cao, Z., & Zhang, T. (2017). Genetic dissection of lint yield and fiber quality traits of G. hirsutum in G. barbadense background. Molecular breeding, 37, 1-12.
Cited By - Cui, Y., Zhao, Y., Wang, Y., Liu, Z., Ijaz, B., Huang, Y., & Hua, J. (2017). Genome-wide identification and expression analysis of the biotin carboxyl carrier subunits of heteromeric acetyl-CoA carboxylase in Gossypium. Frontiers in Plant Science, 8, 624.
Cited By - Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database, 2017, bax092.
Cited By - You, Q., Yi, X., Zhang, K., Wang, C., Ma, X., Zhang, X., ... & Su, Z. (2017). Genome-wide comparative analysis of H3K4me3 profiles between diploid and allotetraploid cotton to refine genome annotation. Scientific reports, 7(1), 9098.
Cited By - Gonzalez, S., Clavijo, B., Rivarola, M., Moreno, P., Fernandez, P., Dopazo, J., & Paniego, N. (2017). ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data. BMC bioinformatics, 18(1), 1-9.
Cited By - Wytko, C., Soto, B., & Ficklin, S. P. (2017). blend4php: a PHP API for galaxy. Database, 2017, baw154.
Cited By - Xu, P., Gao, J., Cao, Z., Chee, P. W., Guo, Q., Xu, Z., ... & Shen, X. (2017). Fine mapping and candidate gene analysis of qFL-chr1, a fiber length QTL in cotton. Theoretical and Applied Genetics, 130, 1309-1319.
Cited By - Wang, W. W., Tan, Z. Y., Xu, Y. Q., Zhu, A. A., Li, Y., Yao, J., ... & Zhang, Z. S. (2017). Chromosome structural variation of two cultivated tetraploid cottons and their ancestral diploid species based on a new high-density genetic map. Scientific Reports, 7(1), 7640.
Cited By - Cai, D., Liu, H., Sang, N., & Huang, X. (2017). Identification and characterization of CONSTANS-like (COL) gene family in upland cotton (Gossypium hirsutum L.). PLoS One, 12(6), e0179038.
Cited By - Li, W., Li, D. D., Han, L. H., Tao, M., Hu, Q. Q., Wu, W. Y., ... & Huang, G. Q. (2017). Genome-wide identification and characterization of TCP transcription factor genes in upland cotton (Gossypium hirsutum). Scientific reports, 7(1), 10118.
Cited By - He, P., Zhao, P., Wang, L., Zhang, Y., Wang, X., Xiao, H., ... & Xiao, G. (2017). The PIN gene family in cotton (Gossypium hirsutum): genome-wide identification and gene expression analyses during root development and abiotic stress responses. BMC genomics, 18, 1-10.
Cited By - Abd El-Moghny, A. M., Santosh, H. B., Raghavendra, K. P., Sheeba, J. A., Singh, S. B., & Kranthi, K. R. (2017). Microsatellite marker based genetic diversity analysis among cotton (Gossypium hirsutum) accessions differing for their response to drought stress. Journal of Plant Biochemistry and Biotechnology, 26, 366-370.
Cited By - Bechere, E., Fang, D. D., Kebede, H., Hardin IV, R. G., Islam, M. S., Li, P., & Scheffler, J. (2017). Quantitative trait loci analysis for net ginning energy requirements in upland cotton (Gossypium hirsutum L.). Euphytica, 213(7), 160.
Cited By - Kushanov, F. N., Buriev, Z. T., Shermatov, S. E., Turaev, O. S., Norov, T. M., Pepper, A. E., ... & Abdurakhmonov, I. Y. (2017). QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt. PloS one, 12(10), e0186240.
Cited By - Kaur, B., Tyagi, P., & Kuraparthy, V. (2017). Genetic diversity and population structure in the landrace accessions of Gossypium hirsutum. Crop Science, 57(5), 2457-2470.
Cited By - Li, W., Xia, X. C., Han, L. H., Ni, P., Yan, J. Q., Tao, M., ... & Li, X. B. (2017). Genome-wide identification and characterization of JAZ gene family in upland cotton (Gossypium hirsutum). Scientific Reports, 7(1), 2788.
Cited By - Ulloa, M., Hulse-Kemp, A. M., De Santiago, L. M., Stelly, D. M., & Burke, J. J. (2017). Insights into upland cotton (Gossypium hirsutum L.) genetic recombination based on 3 high-density single-nucleotide polymorphism and a consensus map developed independently with common parents. Genomics Insights, 10, 1178631017735104.
Cited By - Sun, R., Li, C., Zhang, J., Li, F., Ma, L., Tan, Y., ... & Zhang, B. (2017). Differential expression of microRNAs during fiber development between fuzzless-lintless mutant and its wild-type allotetraploid cotton. Scientific reports, 7(1), 3.
Cited By - Ren, Z., Yu, D., Yang, Z., Li, C., Qanmber, G., Li, Y., ... & Yang, Z. (2017). Genome-wide identification of the MIKC-type MADS-box gene family in Gossypium hirsutum L. unravels their roles in flowering. Frontiers in plant science, 8, 384.
Cited By - Zhang, Y., He, P., Yang, Z., Huang, G., Wang, L., Pang, C., ... & Xiao, G. (2017). A genome-scale analysis of the PIN gene family reveals its functions in cotton fiber development. Frontiers in plant science, 8, 461.
Cited By - Adhikari, J., Das, S., Wang, Z., Khanal, S., Chandnani, R., Patel, J. D., ... & Paterson, A. H. (2017). Targeted identification of association between cotton fiber quality traits and microsatellite markers. Euphytica, 213, 1-15.
Cited By - Wang, C., He, X., Wang, X., Zhang, S., & Guo, X. (2017). ghr-miR5272a-mediated regulation of GhMKK6 gene transcription contributes to the immune response in cotton. Journal of Experimental Botany, 68(21-22), 5895-5906.
Cited By - Zhao, Y., Wang, H., Chen, W., Zhao, P., Gong, H., Sang, X., & Cui, Y. (2017). Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L). BMC genomics, 18(1), 1-12.
Cited By - Li, L., Zhao, S., Su, J., Fan, S., Pang, C., Wei, H., ... & Yu, S. (2017). High-density genetic linkage map construction by F2 populations and QTL analysis of early-maturity traits in upland cotton (Gossypium hirsutum L.). PLoS One, 12(8), e0182918.
Cited By - Naoumkina, M., Hinchliffe, D. J., Fang, D. D., Florane, C. B., & Thyssen, G. N. (2017). Role of xyloglucan in cotton (Gossypium hirsutum L.) fiber elongation of the short fiber mutant Ligon lintless-2 (Li2). Gene, 626, 227-233.
Cited By - Liu, Y., Liu, Z., Peng, R., Wang, Y., Zhou, Z., Cai, X., ... & Liu, F. (2017). Cytogenetic maps of homoeologous chromosomes A h01 and D h01 and their integration with the genome assembly in Gossypium hirsutum. Comparative Cytogenetics, 11(2), 405.
Cited By - Hinze, L. L., Hulse-Kemp, A. M., Wilson, I. W., Zhu, Q. H., Llewellyn, D. J., Taylor, J. M., ... & Stelly, D. M. (2017). Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array. BMC Plant Biology, 17(1), 1-20.
Cited By - Wang, M., Tu, L., Lin, M., Lin, Z., Wang, P., Yang, Q., ... & Zhang, X. (2017). Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nature genetics, 49(4), 579-587.
Cited By - Li, F., Li, M., Wang, P., Cox Jr, K. L., Duan, L., Dever, J. K., ... & He, P. (2017). Regulation of cotton (Gossypium hirsutum) drought responses by mitogen‐activated protein (MAP) kinase cascade‐mediated phosphorylation of Gh WRKY 59. New Phytologist, 215(4), 1462-1475.
Cited By - Wang, W., Zhang, X., Deng, F., Yuan, R., & Shen, F. (2017). Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum. BMC Genomics, 18(1), 1-25.
Cited By - Sun, H., Chen, L., Li, J., Hu, M., Ullah, A., He, X., ... & Zhang, X. (2017). The JASMONATE ZIM-domain gene family mediates JA signaling and stress response in cotton. Plant and Cell Physiology, 58(12), 2139-2154.
Cited By - Salam, M. A., Haque, M. M., Islam, M. O., Uddin, M. N., & Haque, M. N. (2017). Genotypic variation in yield and fiber quality traits of cotton grown from seeds packed in different packaging materials. Sarhad J Agric, 33, 255-262.
Cited By - Saski, C. A., Scheffler, B. E., Hulse-Kemp, A. M., Liu, B., Song, Q., Ando, A., ... & Chen, Z. J. (2017). Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids. Scientific Reports, 7(1), 15274.
Cited By - Cox, K. L., Meng, F., Wilkins, K. E., Li, F., Wang, P., Booher, N. J., ... & Shan, L. (2017). TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton. Nature communications, 8(1), 15588.
Cited By - Du, X., Wang, S., Gao, F., Zhang, L., Zhao, J. H., Guo, H. S., & Hua, C. (2017). Expression of pathogenesis-related genes in cotton roots in response to Verticillium dahliae PAMP molecules. Science China Life Sciences, 60, 852-860.
Cited By - Gapare, W., Conaty, W., Zhu, Q. H., Liu, S., Stiller, W., Llewellyn, D., & Wilson, I. (2017). Genome-wide association study of yield components and fibre quality traits in a cotton germplasm diversity panel. Euphytica, 213, 1-22.
Cited By - Liu, X., Teng, Z., Wang, J., Wu, T., Zhang, Z., Deng, X., ... & Zhang, Z. (2017). Enriching an intraspecific genetic map and identifying QTL for fiber quality and yield component traits across multiple environments in Upland cotton (Gossypium hirsutum L.). Molecular Genetics and Genomics, 292(6), 1281-1306.
Cited By - Ma, L., Zhao, Y., Wang, Y., Shang, L., & Hua, J. (2017). QTLs analysis and validation for fiber quality traits using maternal backcross population in upland cotton. Frontiers in Plant Science, 8, 2168.
Cited By - Lu, T., Zhang, G., Sun, L., Wang, J., & Hao, F. (2017). Genome-wide identification of CBL family and expression analysis of CBLs in response to potassium deficiency in cotton. PeerJ, 5, e3653.
Cited By - Sturtevant, D., Horn, P., Kennedy, C., Hinze, L., Percy, R., & Chapman, K. (2017). Lipid metabolites in seeds of diverse Gossypium accessions: molecular identification of a high oleic mutant allele. Planta, 245, 595-610.
Cited By - Kumar, A., Karunakar, A. P., Nath, A., & Meena, B. R. (2017). The morphological and phenological performance of different cotton genotypes under different plant density. Journal of Applied and Natural Science, 9(4), 2242-2248.
Cited By - Li, P. T., Wang, M., Lu, Q. W., Ge, Q., Rashid, M. H. O., Liu, A. Y., ... & Yuan, Y. L. (2017). Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum× G. barbadense. BMC genomics, 18, 1-17.
Cited By - Ahmed, M. M., Shen, C., Khan, A. Q., Wahid, M. A., Shaban, M., & Lin, Z. (2017). A comparative genomics approach revealed evolutionary dynamics of microsatellite imperfection and conservation in genus Gossypium. Hereditas, 154(1), 1-12.
Cited By - Zhang, B., Liu, G., Li, X., Guo, L., Zhang, X., Qi, T., ... & Wu, J. (2017). A genome-wide identification and analysis of the DYW-deaminase genes in the pentatricopeptide repeat gene family in cotton (Gossypium spp.). PloS one, 12(3), e0174201.
Cited By - Naqvi, R. Z., Zaidi, S. S. E. A., Akhtar, K. P., Strickler, S., Woldemariam, M., Mishra, B., ... & Mansoor, S. (2017). Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum. Scientific reports, 7(1), 15880.
Cited By - Sun, Q., Wang, G., Zhang, X., Zhang, X., Qiao, P., Long, L., ... & Cai, Y. (2017). Genome-wide identification of the TIFY gene family in three cultivated Gossypium species and the expression of JAZ genes. Scientific Reports, 7(1), 42418.
Cited By - Zhang, Z., Ruan, Y. L., Zhou, N., Wang, F., Guan, X., Fang, L., ... & Zhang, T. (2017). Suppressing a putative sterol carrier gene reduces plasmodesmal permeability and activates sucrose transporter genes during cotton fiber elongation. The Plant Cell, 29(8), 2027-2046.
Cited By - Montes, E., Coriton, O., Eber, F., Huteau, V., Lacape, J. M., Reinhardt, C., ... & Pannetier, C. (2017). Assessment of gene flow between Gossypium hirsutum and G. herbaceum: evidence of unreduced gametes in the diploid progenitor. G3: Genes, Genomes, Genetics, 7(7), 2185-2193.
Cited By - Zhang, G., Lu, T., Miao, W., Sun, L., Tian, M., Wang, J., & Hao, F. (2017). Genome-wide identification of ABA receptor PYL family and expression analysis of PYLs in response to ABA and osmotic stress in Gossypium. PeerJ, 5, e4126.
Cited By - Qin, Y., Wei, H., Sun, H., Hao, P., Wang, H., Su, J., & Yu, S. (2017). Proteomic analysis of differences in fiber development between wild and cultivated Gossypium hirsutum L. Journal of Proteome Research, 16(8), 2811-2824.
Cited By - Ma, Q., Zhao, J., Lin, H., Ning, X., Liu, P., Deng, F., ... & Li, J. (2017). Association between SSR markers and fibre traits in sea island cotton (Gossypium barbadense) germplasm resources. Journal of genetics, 96, 55-63.
Cited By - Shen, C., Jin, X., Zhu, D., & Lin, Z. (2017). Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq. BMC genomics, 18(1), 1-13.
Cited By - Zhang, Y., Wang, X., Rong, W., Yang, J., Li, Z., Wu, L., ... & Ma, Z. (2017). Histochemical analyses reveal that stronger intrinsic defenses in Gossypium barbadense than in G. hirsutum are associated with resistance to Verticillium dahliae. Molecular Plant-Microbe Interactions, 30(12), 984-996.
Cited By - Guo, X., Wang, Y., Lu, H., Cai, X., Wang, X., Zhou, Z., ... & Liu, F. (2017). Genome-wide characterization and expression analysis of the aldehyde dehydrogenase (ALDH) gene superfamily under abiotic stresses in cotton. Gene, 628, 230-245.
Cited By - Li, Y. J., Zhu, S. H., Zhang, X. Y., Liu, Y. C., Xue, F., Zhao, L. J., & Sun, J. (2017). Expression and functional analyses of a Kinesin gene GhKIS13A1 from cotton (Gossypium hirsutum) fiber. BMC biotechnology, 17(1), 1-9.
Cited By - Shang, H. H., Gong, W. K., Li, J. W., Song, W. W., Guo, L. X., Su, W., ... & Yuan, Y. L. (2017). Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum× G. barbadense.BMC Genomics.
Cited By - Liu, Z., Ge, X., Yang, Z., Zhang, C., Zhao, G., Chen, E., ... & Li, F. (2017). Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.). BMC genetics, 18(1), 1-14.
Cited By - Wang, N., Ma, J., Pei, W., Wu, M., Li, H., Li, X., ... & Yu, J. (2017). A genome-wide analysis of the lysophosphatidate acyltransferase (LPAAT) gene family in cotton: organization, expression, sequence variation, and association with seed oil content and fiber quality. BMC genomics, 18(1), 1-18.
Cited By - Andres, R. J., Coneva, V., Frank, M. H., Tuttle, J. R., Samayoa, L. F., Han, S. W., ... & Kuraparthy, V. (2017). Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proceedings of the National Academy of Sciences, 114(1), E57-E66.
Cited By - Andres, R. J., Coneva, V., Frank, M. H., Tuttle, J. R., Samayoa, L. F., Han, S. W., ... & Kuraparthy, V. (2017). Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proceedings of the National Academy of Sciences, 114(1), E57-E66.
Cited By - Farooq, M., Mansoor, S., Guo, H., Amin, I., Chee, P. W., Azim, M. K., & Paterson, A. H. (2017). Identification and characterization of miRNA transcriptome in Asiatic cotton (Gossypium arboreum) using high throughput sequencing. Frontiers in Plant Science, 8, 969.
Cited By - Su, Y., Wang, Y., Zhen, J., Zhang, X., Chen, Z., Li, L., ... & Hua, J. (2017). SnRK2 homologs in Gossypium and GhSnRK2. 6 improved salt tolerance in transgenic upland cotton and Arabidopsis. Plant Molecular Biology Reporter, 35, 442-456.
Cited By - Tieu, S., Chen, Y., Woolley, L. K., Collins, D., Barchia, I., Lo, N., & Herron, G. A. (2017). A significant fitness cost associated with ACE 1 target site pirimicarb resistance in a field isolate of Aphis gossypii Glover from Australian cotton. Journal of Pest Science, 90, 773-779.
Cited By - Ke, L., Luo, B., Zhang, L., Zhang, M., Yu, X., Sun, J., & Sun, Y. (2017). Differential transcript profiling alters regulatory gene expression during the development of Gossypium arboreum, G. stocksii and somatic hybrids. Scientific Reports, 7(1), 3120.
Cited By - Kumar Tripathy, M., Weeraratne, G., Clark, G., & Roux, S. J. (2017). Apyrase inhibitors enhance the ability of diverse fungicides to inhibit the growth of different plant‐pathogenic fungi. Molecular plant pathology, 18(7), 1012-1023.
Cited By - Zhang, Y., Jiao, Y., Jiao, H., Zhao, H., & Zhu, Y. X. (2017). Two-step functional innovation of the stem-cell factors WUS/WOX5 during plant evolution. Molecular biology and evolution, 34(3), 640-653.
Cited By